View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14121_low_4 (Length: 547)

Name: NF14121_low_4
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14121_low_4
NF14121_low_4
[»] chr5 (2 HSPs)
chr5 (1-399)||(33601437-33601834)
chr5 (491-539)||(33601926-33601974)
[»] chr2 (13 HSPs)
chr2 (1-231)||(10471704-10471928)
chr2 (6-226)||(10505942-10506154)
chr2 (118-231)||(10544304-10544417)
chr2 (290-399)||(10472207-10472317)
chr2 (1-227)||(10487294-10487513)
chr2 (290-386)||(10506280-10506375)
chr2 (287-390)||(10859956-10860058)
chr2 (1-148)||(7482692-7482832)
chr2 (12-65)||(10491833-10491886)
chr2 (1-62)||(10517159-10517220)
chr2 (289-338)||(10544508-10544557)
chr2 (2-62)||(10544188-10544248)
chr2 (122-161)||(10859757-10859796)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 33601437 - 33601834
Alignment:
Q  1 acccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagcccacctttctctctctttt--ctagtatgcatcaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||    
T  33601437 acccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagcccacctttctctctctttttactagtatatatcaa 33601536  T
Q  99 acacataaaaggtagtatatttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctcacttagaccaagaacataagatgggtgta 198  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  33601537 acacataaaaggta---tatttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctcacttaggccaagaacataggatgggtgta 33601633  T
Q  199 tcgcattgggattttaaaagacttgtttgtgatnnnnnnnttgttaaagtcttttcaagcaggtgtataaatctagtggcattcaaatactttttacaaa 298  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601634 tcgcattgggattttaaaagacttgtttgtgataaaaaaattgttaaagtcttttcaagcaggtgtataaatctagtggcattcaaatactttttacaaa 33601733  T
Q  299 ttacaaagagtcatgtggtatttaaaaactttttaatatcagtgaattgttttataaattaaatttggttggacattgtagtgactttttaatttcttgt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601734 ttacaaagagtcatgtggtatttaaaaactttttaatatcagtgaattgttttataaattaaatttggttggacattgtagtgactttttaatttcttgt 33601833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 33601926 - 33601974
Alignment:
Q  491 acaaaaattggagtatcaaagcatcactatgataactaaattccctttg 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601926 acaaaaattggagtatcaaagcatcactatgataactaaattccctttg 33601974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10471704 - 10471928
Alignment:
Q  1 acccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagcccacctttctctctcttttctagtatgcatcaaac 100  Q
    ||||||||| |||| |||||||||||||||| ||| ||||| ||||||||||||||| |||||||| |||||||||  |    ||||||||  ||| | |    
T  10471704 acccatagcgaggcataactaactggccaaccaacacaacctaacaactaactctccaccctagccgacctttctccgt----tctagtatatatctacc 10471799  T
Q  101 acataaaaggtagtatatttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctcacttagaccaagaacataagatgggtgtatc 200  Q
    ||||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||| |||| |||||||| |||    
T  10471800 acataaaaggta---tatttaggattgaatctaacatatgatccaagtcatgttcaacctcattgtctcactttggccaagagcataggatgggtgcatc 10471896  T
Q  201 gcattgggatttt-aaaagacttgtttgtgat 231  Q
     |||||||||||| ||||||||||| ||||||    
T  10471897 acattgggattttaaaaagacttgtctgtgat 10471928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 10505942 - 10506154
Alignment:
Q  6 tagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagcccacctttctctctcttttctagtatgcatcaaacacata 105  Q
    |||||||| ||||||||||||||||| | | ||||| |||||||||||||||||||||||||| ||||||  ||    ||| ||||  ||  ||||||||    
T  10505942 tagctaggtgtaactaactggccaacca-cacaacctaacaactaactctcctccctagcccagctttcttcct----tcttgtatatatttaacacata 10506036  T
Q  106 aaaggtagtatatttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctcacttagaccaagaacataagatgggtgtatcgcatt 205  Q
    |||   |||||||||| ||| | |||||||||||||||||||||| |||| |||| |||||||||||||| || ||||| |  ||||||||| |||||||    
T  10506037 aaa---agtatatttacgctcggatccaacatatgatccaagtcaagttctacctaattatctcacttaggcctagaacttgggatgggtgtctcgcatt 10506133  T
Q  206 gggattttaaaagacttgttt 226  Q
    |||||||||||||| ||||||    
T  10506134 gggattttaaaagatttgttt 10506154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 10544304 - 10544417
Alignment:
Q  118 tttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctcacttagaccaagaacataagatgggtgtatcgcattgggattttaaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||| || || |||||||||||||| |||||||||||    
T  10544304 tttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctctcttaggcttagaacttaggacgggtgtatcgcattaggattttaaaa 10544403  T
Q  218 gacttgtttgtgat 231  Q
    ||||||||||||||    
T  10544404 gacttgtttgtgat 10544417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 10472207 - 10472317
Alignment:
Q  290 ttttacaaattacaaagagtcatgtggtatttaaaaactttttaatatcagtgaattgttttataaattaaatttggttggaca-ttgtagtgacttttt 388  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |||  |||||||| |||||||||||||||    
T  10472207 ttttacaaattacaaagagtcgtgtggtatttaaaaactttttaatatcagtgatttattttataaattagattatgttggacatttgtagtgacttttt 10472306  T
Q  389 aatttcttgtc 399  Q
    |||||||||||    
T  10472307 aatttcttgtc 10472317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10487294 - 10487513
Alignment:
Q  1 acccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagcccacctttctctctcttttctagtatgcatcaaac 100  Q
    |||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||| |  |||||| |  |     ||||||||   || |||    
T  10487294 acccatagctgggcgtaactaactggccaaccaacctaacctaacaactaactctcctccctaacatacctttattccg----tctagtatatttctaac 10487389  T
Q  101 acataaaaggtagtatatttaggcttgaatccaacatatgatccaagtcatgttcaacctcattatctcacttagaccaagaacataagatgggtgtatc 200  Q
    |||| |||||||   |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| || ||||| || ||    ||||||    
T  10487390 acatcaaaggta---tatttaggcttgaatccaacatatgaaccaagtcatgtttaacctcattacctcacttaggcctagaacttaggacacatgtatc 10487486  T
Q  201 gcattgggattttaaaagacttgtttg 227  Q
    |||| || |||||||||||||| ||||    
T  10487487 gcatcggtattttaaaagacttttttg 10487513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 10506280 - 10506375
Alignment:
Q  290 ttttacaaattacaaagagtcatgtggtatttaaaaactttttaatatcagtgaattgttttataaattaaatttggttggacattgtagtgacttt 386  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||| || ||||||||||||| |||| |||||||||||||||||||||    
T  10506280 ttttacaaattacaaagagtcatgtgatatttacaaactttttcatatcagtggatagttttataaattatattt-gttggacattgtagtgacttt 10506375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 10859956 - 10860058
Alignment:
Q  287 actttttacaaattacaaagagtcatgtggtatttaaaaactttttaatatcagtgaattgttttataaattaaatttggttggacattgtagtgacttt 386  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||| |||  || ||||||||||| |||| |||| |||||||||||||||||||||    
T  10859956 actttttacaaattacaacaagtcttgtggtatttaaaaactttttaacatcgatggattgttttatatattagattt-gttggacattgtagtgacttt 10860054  T
Q  387 ttaa 390  Q
    ||||    
T  10860055 ttaa 10860058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 7482832 - 7482692
Alignment:
Q  1 acccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagcccacctttctctctcttttctagtatgcatcaaac 100  Q
    |||||||||| |||| ||||||||||||||| ||||||| | ||||||||||||| |||||||||  |||||| |  |     || |||||   || |||    
T  7482832 acccatagctgggcgaaactaactggccaaccaacccaatctaacaactaactctactccctagcatacctttattcc----gtccagtatctttctaac 7482737  T
Q  101 acataaaaggtagtatatttaggcttgaatccaacatatgatccaagt 148  Q
    |||||||||   ||||||||||||||||||||||||||||| ||||||    
T  7482736 acataaaag---gtatatttaggcttgaatccaacatatgaaccaagt 7482692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 10491833 - 10491886
Alignment:
Q  12 ggcgtaactaactggccaacaaacccaacccaacaactaactctcctccctagc 65  Q
    |||||||||||||| |||   ||||||||| |||||||||||||||||||||||    
T  10491833 ggcgtaactaactgaccattcaacccaacctaacaactaactctcctccctagc 10491886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10517159 - 10517220
Alignment:
Q  1 acccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccct 62  Q
    |||||||||||||| |||||||||| ||||| |||||| || ||| |||||||||| |||||    
T  10517159 acccatagctaggcttaactaactgtccaactaacccagcctaaccactaactctcttccct 10517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 10544508 - 10544557
Alignment:
Q  289 tttttacaaattacaaagagtcatgtggtatttaaaaactttttaatatc 338  Q
    |||||||||||||||||| ||| | |||||||||||| ||||||||||||    
T  10544508 tttttacaaattacaaagggtcgtttggtatttaaaagctttttaatatc 10544557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 10544188 - 10544248
Alignment:
Q  2 cccatagctaggcgtaactaactggccaacaaacccaacccaacaactaactctcctccct 62  Q
    |||||||||||  |||| |||||||||||| ||||||||| ||||||||| ||| ||||||    
T  10544188 cccatagctagttgtaaataactggccaactaacccaacctaacaactaattcttctccct 10544248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 10859757 - 10859796
Alignment:
Q  122 ggcttgaatccaacatatgatccaagtcatgttcaacctc 161  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  10859757 ggcttgaatctaacatatgatccaagtcatgttcagcctc 10859796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University