View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14121_low_6 (Length: 508)

Name: NF14121_low_6
Description: NF14121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14121_low_6
NF14121_low_6
[»] chr8 (2 HSPs)
chr8 (126-508)||(15235176-15235557)
chr8 (2-128)||(15235585-15235711)
[»] chr4 (4 HSPs)
chr4 (126-346)||(23794693-23794913)
chr4 (1-82)||(23794443-23794524)
chr4 (428-502)||(23795032-23795099)
chr4 (360-419)||(23794936-23794996)
[»] chr1 (11 HSPs)
chr1 (126-339)||(28015313-28015526)
chr1 (428-504)||(12266267-12266343)
chr1 (428-504)||(19068932-19069008)
chr1 (428-504)||(19116822-19116898)
chr1 (428-504)||(13533110-13533186)
chr1 (390-504)||(34880358-34880474)
chr1 (1-78)||(28015063-28015140)
chr1 (366-428)||(13533021-13533083)
chr1 (366-425)||(19069047-19069106)
chr1 (366-425)||(19116937-19116996)
chr1 (366-430)||(12266178-12266242)
[»] chr7 (2 HSPs)
chr7 (230-430)||(30460691-30460899)
chr7 (428-504)||(30460590-30460666)
[»] chr5 (2 HSPs)
chr5 (428-504)||(10720455-10720531)
chr5 (368-430)||(10720368-10720430)
[»] chr2 (2 HSPs)
chr2 (428-504)||(27506478-27506554)
chr2 (428-503)||(21565422-21565498)
[»] chr6 (2 HSPs)
chr6 (428-504)||(21808888-21808964)
chr6 (366-428)||(21808799-21808861)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 126 - 508
Target Start/End: Complemental strand, 15235557 - 15235176
Alignment:
Q  126 gaacatttagataggcagccaggtgcgacgtcctctgtcaggtctagcaccagttttagtatgtcgttacaaaacgtgactgatgaaatagttcgaccac 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  15235557 gaacatttagataggcagccaggtgcgacgtcctctgtcaggtctagcaccacttttagtatgtcgttacaaaatgtgactgatgaaatagtttgaccac 15235458  T
Q  226 aaattattgttaatgaggttcagcccattctcactctggtctctgatttgccaaacattcaaaatattattgcttatacggatgctccggtggatctggt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  15235457 aaattattgttaatgaggttcagcccattctcactctggtctctgatttcccaaacattgaaaatattattgctgatacggatgctccggt-gatctggt 15235359  T
Q  326 tttacaaaaggaaatggattcagcgaaagaatttggtgccacaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatcca 425  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15235358 tttacaaaaggaaatgaattcagtgaaagattttggtgccacaacatctgtccatgatgattcggaggtgcaacttgcgaaggaccaacatattcatcca 15235259  T
Q  426 gttcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaaggattgc 508  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15235258 gttcacgaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaattcgagaatatgatcaaaggattgc 15235176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 15235711 - 15235585
Alignment:
Q  2 gagggtattggatcccctaaggcattcgaaattccgacactcattccacaaccagatgcacgtgcagaaacactacaggtgatagttagataggcaacca 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||    
T  15235711 gagggtattggatcccctaaggcattcaaaattccgacactcattccacaaccagatgcacgtgcagaaacactataggtgacatttagataggcaacca 15235612  T
Q  102 ccgattacacatacaatagcacaagaa 128  Q
    |||||||| ||||||||||||||||||    
T  15235611 ccgattacgcatacaatagcacaagaa 15235585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 126 - 346
Target Start/End: Original strand, 23794693 - 23794913
Alignment:
Q  126 gaacatttagataggcagccaggtgcgacgtcctctgtcaggtctagcaccagttttagtatgtcgttacaaaacgtgactgatgaaatagttcgaccac 225  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  23794693 gaacatttagataggcagccaggtgtgacgtcccctatcaggtctagcgccacttttagtatgtcgttgcaaaacgtgactgatgaaatagttcgaccac 23794792  T
Q  226 aaattattgttaatgaggttcagcccattctcactctggtctctgatttgccaaacattcaaaatattattgcttatacggatgctccggtggatctggt 325  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||  |||||||| |||||||| |||    
T  23794793 agattattgttaatgaggttcagccccttctcactctggtctctgatttaccaaacattcaaaagattattgctgatctggatgctctggtggatccggt 23794892  T
Q  326 tttacaaaaggaaatggattc 346  Q
    |||||||||||||||||||||    
T  23794893 tttacaaaaggaaatggattc 23794913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23794443 - 23794524
Alignment:
Q  1 ggagggtattggatcccctaaggcattcgaaattccgacactcattccacaaccagatgcacgtgcagaaacactacaggtg 82  Q
    |||||||||||| ||| | |||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  23794443 ggagggtattggctcctccaaggcatttgaaattccggcactcattccacaatcatatgcacgtgcagaaacactacaggtg 23794524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 502
Target Start/End: Original strand, 23795032 - 23795099
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaag 502  Q
    |||||||||||||| ||||||||||||       |||||||| ||||||||||||||| ||||||||||||||||    
T  23795032 tcaagaggttcacagtaacaagaacat-------gatttggatttatgggcaagaattcgagaatatgatcaaag 23795099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 23794936 - 23794996
Alignment:
Q  360 ggtgccacaacatctgtccatgatgattcggaggtgcaaatt-gcgaaggaccaacatatt 419  Q
    ||||||||||| ||| ||||||||||| |||||||||  ||| | ||||||||||||||||    
T  23794936 ggtgccacaacgtctatccatgatgatacggaggtgcggattggtgaaggaccaacatatt 23794996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 126 - 339
Target Start/End: Original strand, 28015313 - 28015526
Alignment:
Q  126 gaacatttagataggcagccaggtgcgacgtcctctgtcaggtctagcaccagttttagtatgtcgttacaaaacgtgactgatgaaatagttcgaccac 225  Q
    ||||| ||||||||||||| ||||| ||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  28015313 gaacacttagataggcagctaggtgtgacgtcccctgtcaggtctagcgccacttttagtatgtcgttacagaacgtgactgatgaaatagttcgaccac 28015412  T
Q  226 aaattattgttaatgaggttcagcccattctcactctggtctctgatttgccaaacattcaaaatattattgcttatacggatgctccggtggatctggt 325  Q
    ||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||| | || ||||||||| |||||||||| |    
T  28015413 aaaatattgttaatgaggtccagccccttctcactctggtctctgatttcccaaacattaaaaatattattgttgatccggatgctctggtggatctgat 28015512  T
Q  326 tttacaaaaggaaa 339  Q
    ||||||||||||||    
T  28015513 tttacaaaaggaaa 28015526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 12266267 - 12266343
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  12266267 tcaagaggttcacagtaacaagaacatccagcatgatttggaattatgggcaagaatttgataatatgatcaaagga 12266343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 19069008 - 19068932
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||    
T  19069008 tcaagaggttcacagtaacaagaacatcaagcatgatttggaattatgggcaaaaattcaagaatatgatcaaagga 19068932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 19116898 - 19116822
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||    
T  19116898 tcaagaggttcacagtaacaagaacatcaagcatgatttggaattatgggcaaaaattcaagaatatgatcaaagga 19116822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 13533110 - 13533186
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||    
T  13533110 tcaagagattcacagtaacaagaacatcaagcatgatttggaattatgggcaaaaattcaagaatatgatcaaagga 13533186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 504
Target Start/End: Complemental strand, 34880474 - 34880358
Alignment:
Q  390 gaggtgcaaattgcgaaggaccaacatattcatccagttca-agaggttca-cattaacaagaacatctagcatgatttggaattatgggcaagaatttg 487  Q
    ||||||||  ||||||| |||||||||||||| || ||||| |   ||||| || ||||||||||||| | ||||||||||||||||||||||||||| |    
T  34880474 gaggtgcaggttgcgaaagaccaacatattcagcccgttcagattagttcaacagtaacaagaacatccaccatgatttggaattatgggcaagaattcg 34880375  T
Q  488 agaatatgatcaaagga 504  Q
    |||||||||||||||||    
T  34880374 agaatatgatcaaagga 34880358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28015063 - 28015140
Alignment:
Q  1 ggagggtattggatcccctaaggcattcgaaattccgacactcattccacaaccagatgcacgtgcagaaacactaca 78  Q
    |||||||||||| ||| | |||||||| ||||||||  ||||||||||||||| |||||||| |||||||||||||||    
T  28015063 ggagggtattggctcctccaaggcatttgaaattccagcactcattccacaactagatgcacatgcagaaacactaca 28015140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 13533021 - 13533083
Alignment:
Q  366 acaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatccagtt 428  Q
    ||||||||||||||||||||| | |||||||| |||| |||||||||||||||||| ||||||    
T  13533021 acaacatctgtccatgatgatacagaggtgcagattgagaaggaccaacatattcagccagtt 13533083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 19069106 - 19069047
Alignment:
Q  366 acaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatcca 425  Q
    ||||||||||||||||||||| |  ||||||| |||| ||||||||||||||||||||||    
T  19069106 acaacatctgtccatgatgatacataggtgcagattgagaaggaccaacatattcatcca 19069047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 19116996 - 19116937
Alignment:
Q  366 acaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatcca 425  Q
    ||||||||||||||||||||| |  ||||||| |||| ||||||||||||||||||||||    
T  19116996 acaacatctgtccatgatgatacataggtgcagattgagaaggaccaacatattcatcca 19116937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 12266178 - 12266242
Alignment:
Q  366 acaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatccagttca 430  Q
    ||||||| ||||||||| ||| | |||||||| |||| |||||||||||||||||| ||||||||    
T  12266178 acaacatatgtccatgacgatacagaggtgcagattgtgaaggaccaacatattcagccagttca 12266242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 430
Target Start/End: Complemental strand, 30460899 - 30460691
Alignment:
Q  230 tattgttaatgaggttcagcccattctcactctggtctctgatttgccaaacattcaaaatattattgcttatacggatgctccggtggatctggtttta 329  Q
    |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||| | || |||||||||||||||||| |||||||    
T  30460899 tattgttaatgaggttcagccccttctcactctggtctctcatttcccaaacattc-aaatattattgttgatccggatgctccggtggatccggtttta 30460801  T
Q  330 caaaaggaaatggattcagcgaaagaatt---------tggtgccacaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattc 420  Q
    |||||||||||| ||| || |||||| ||          |||| |||| ||| |||| ||||||||| ||||||||  || | |||||||||||||||||    
T  30460800 caaaaggaaatgaattaagtgaaagatttattactaaacggtgtcacatcatatgtcaatgatgatttggaggtgcggatcgtgaaggaccaacatattc 30460701  T
Q  421 atccagttca 430  Q
    | ||||||||    
T  30460700 agccagttca 30460691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 30460666 - 30460590
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||||||    
T  30460666 tcaagaggttcacagtaacaagaacatccatcatgatttggaattatgggcaagaattcgataatatgatcaaagga 30460590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 10720455 - 10720531
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  10720455 tcaagaggttcacagtaacaagaacatccagcatgatttggaattatgagcaagaattcgagaatatgatcaaagga 10720531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 430
Target Start/End: Original strand, 10720368 - 10720430
Alignment:
Q  368 aacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatccagttca 430  Q
    ||||||||||||||||||| |  ||||||| ||||| ||||||||||||||||| ||||||||    
T  10720368 aacatctgtccatgatgatacataggtgcagattgcaaaggaccaacatattcagccagttca 10720430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 27506478 - 27506554
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27506478 tcaagaggttcacagtaacaagaacatccaacatgatttggaattatgggcaagaattcgagaatatgatcaaagga 27506554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 503
Target Start/End: Original strand, 21565422 - 21565498
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaatta-tgggcaagaatttgagaatatgatcaaagg 503  Q
    |||| ||||||||| ||||||||||||| | ||||| || |||||| |||| ||||||| |||||||||||||||||    
T  21565422 tcaaaaggttcacagtaacaagaacatccatcatgactttgaattattgggaaagaattcgagaatatgatcaaagg 21565498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 428 - 504
Target Start/End: Original strand, 21808888 - 21808964
Alignment:
Q  428 tcaagaggttcacattaacaagaacatctagcatgatttggaattatgggcaagaatttgagaatatgatcaaagga 504  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |  |||||||||||||||||    
T  21808888 tcaagaggttcacagtaacaagaacatcaagcatgatttggaattatgggcaaaaaatcaagaatatgatcaaagga 21808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 21808799 - 21808861
Alignment:
Q  366 acaacatctgtccatgatgattcggaggtgcaaattgcgaaggaccaacatattcatccagtt 428  Q
    ||||||||  ||||||||||| | |||||| | |||| |||||||||||||||||| ||||||    
T  21808799 acaacatcgatccatgatgatacagaggtgtagattgagaaggaccaacatattcagccagtt 21808861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University