View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14122_high_3 (Length: 597)
Name: NF14122_high_3
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14122_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 29878178 - 29877848
Alignment:
| Q |
17 |
gcttcccttgtgacagattctggttgagcaacttcccacttaattagttatcctaattttaattagactatgctcttggtctaaattactttaaaactat |
116 |
Q |
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| T |
29878178 |
gcttcccatgcgacaaattctggttcatcaacttcctacttaattagttatcctaattctcattagatcgtgctcttagttttaattgcgt-aaaactat |
29878080 |
T |
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| Q |
117 |
tt-atagtaaggcaagaagcaattaaaaactatattgaaatcttaattaagaaacacactataatttattgacatgttgagcacaagtactactaaacac |
215 |
Q |
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| T |
29878079 |
tttaaattatggtaagaagcaattaaatactatattgaaatcttaattaagaaacacactaaaatttattgagatgttgagcacaagtactactaaacac |
29877980 |
T |
|
| Q |
216 |
actatagtacaaagtttgaaacaatttgacgcagtttcgcagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacac |
315 |
Q |
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| T |
29877979 |
actatagtcaagactttgatacaatttga----------cagataatcaaaactaagtaccctgcacaagcaaaagtagaaagtgacccttgttctacac |
29877890 |
T |
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| Q |
316 |
tcccaataccagacaaataaattctgctatatcctcaaccat |
357 |
Q |
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| T |
29877889 |
ttccaataccaaacaaataaattatgttatatcctctaccat |
29877848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 24259174 - 24259509
Alignment:
| Q |
20 |
tcccttgtgacagattctggttgagcaacttcccacttaattagttatcctaattttaattagactatgctcttggtctaaattactttaaaacta-ttt |
118 |
Q |
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| T |
24259174 |
tcccttgagacagattctggttcagcaacttcccacttaattaattatcctaattctcattagactgtgctattagtcttaattac-ttaaaactatttt |
24259272 |
T |
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| Q |
119 |
atagtaaggcaagaagcaatt---aaaaactatattgaa-------atcttaattaagaaacacactataatttattgacatgttgagcacaagtactac |
208 |
Q |
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| T |
24259273 |
atattgaggtaaggagaaattcaataatactatattgaaatctaagatcttaatcaag-aacacacaataatttattgagatgttgagcagaagtactac |
24259371 |
T |
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| Q |
209 |
taaacacactatagtacaaagtttgaaacaatttgacgcagtttcgcagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgt |
308 |
Q |
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| T |
24259372 |
taaacacac--cagtacagagtttgatgtaatttgac---------aagataatcgaaaccaagtacccagcacaagcacaaatagaaagtgaaccttgt |
24259460 |
T |
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| Q |
309 |
tctacactcccaataccagacaaataaattctgctatatcctcaaccat |
357 |
Q |
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| T |
24259461 |
tctacacttccaatgcaagacaaagaaattatgttatagcctcaaccat |
24259509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 238 - 430
Target Start/End: Original strand, 5571661 - 5571852
Alignment:
| Q |
238 |
aatttgacgcagtttcgcagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaataaat |
337 |
Q |
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| T |
5571661 |
aatttgacacattttgacagatagtcaaaacca-gtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaatgccagactaatatat |
5571759 |
T |
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| Q |
338 |
tctgctatatcctcaaccatgatttgttttatgtagtagcaacagggattgcatgtatttcaatgagactcagaactctaaccatatttatac |
430 |
Q |
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| T |
5571760 |
tatgttatatccttaaccataatttgtttaatgtagtagcaaccgggattgcatatctttcaatgagactcggaactctaaccatatttatac |
5571852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 556 - 594
Target Start/End: Original strand, 5570227 - 5570265
Alignment:
| Q |
556 |
caacaaattctcatcactatttttcagctcattcatctc |
594 |
Q |
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| T |
5570227 |
caacaaattctcatcactatttttcagctcattcatctc |
5570265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 594
Target Start/End: Original strand, 5579521 - 5579576
Alignment:
| Q |
538 |
tatgccataaaacttgctcaacaaattctcatcactatttttcagctcattcatctc |
594 |
Q |
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| T |
5579521 |
tatgccagaaaacatgtgcaacaatttctcatcact-tttttcagctcattcatctc |
5579576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 27972665 - 27972752
Alignment:
| Q |
238 |
aatttgacgcagtttcgcagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaatacca |
326 |
Q |
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| T |
27972665 |
aatttgacacaatttgacagatagtcaaaatca-gtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaatacca |
27972752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 806887 - 806792
Alignment:
| Q |
238 |
aatttgacgcagtttcgcagataatcaaaaccaagtaccctgcacaaaaacaaatagaaagtgacccttgttctacactcccaataccagacaaata |
334 |
Q |
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| T |
806887 |
aatttgacacaatttgacagatagtcaaaacca-gtaccctgcacaagcacaaataaaaagtgacacttcttttacacttccaataccagactaata |
806792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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