View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14122_high_5 (Length: 527)
Name: NF14122_high_5
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14122_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 30 - 510
Target Start/End: Complemental strand, 32865552 - 32865072
Alignment:
| Q |
30 |
atgattgaatgcaaagaaataaacttggcagaaagtatgaaatttcatataatgtctacaattttaacgaaaactatacattacacagaaaatactataa |
129 |
Q |
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| T |
32865552 |
atgattgaatgcaaagaaataaacttggcagaaagtatgaaaattcatataatgtctacaattttaacgaaaactatacattacacagaaaatactataa |
32865453 |
T |
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| Q |
130 |
ctataagcatcacaatggggaatgcttgattacatggtgtcacgtggaaacctatacatgaagcttacacaagagacaaaccacaaaagattatacaaac |
229 |
Q |
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| T |
32865452 |
ctataagcatcacaatggggaatgcttgattacatggtgtcacgtggaaacctatacatgaagcttacacaagagacaaaccacaaaagattatacaaac |
32865353 |
T |
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| Q |
230 |
tnnnnnnnntgttaaaagataactgtttgaagaagtttatgtggacatgttggaaaaaatgatccacttagttttatgttttaggttcattggtctattt |
329 |
Q |
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| T |
32865352 |
taaaaaaaatgttaaaagataactgtttgaagaagtttatgtggacatgttggaaaaaatgatccacttagttttatgttttaggttcattgatctattt |
32865253 |
T |
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| Q |
330 |
tgtttttgatgacttaaggcacaaattgcatgcctctccagtaattatgttccaggcaaattgctgctagtgctagaaagaattatgaatgcacaaacaa |
429 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32865252 |
tgtttttgatgatttaaggcacaaattgcatgcctctccagtaattatgttccaggcaaattgctgctagtgctagaaagaattatgaatgcacaaacaa |
32865153 |
T |
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| Q |
430 |
ctgaaagtgagaagactgataaccatgtgttctctgtgtacatttccattgcatcggtgaaggaaaaccgtgcgcggtttt |
510 |
Q |
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| T |
32865152 |
ctgaaagtgagaagactgataaccatgtgttctctgtgtacatttccattgcatcggtgaaggaaaaccgtgcgcggtttt |
32865072 |
T |
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