View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14122_low_1 (Length: 651)

Name: NF14122_low_1
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14122_low_1
NF14122_low_1
[»] chr4 (4 HSPs)
chr4 (18-496)||(55335915-55336394)
chr4 (51-496)||(55330516-55330956)
chr4 (551-634)||(55336449-55336532)
chr4 (554-634)||(55331017-55331097)
[»] chr2 (31 HSPs)
chr2 (328-493)||(8431120-8431285)
chr2 (323-492)||(8375861-8376030)
chr2 (344-492)||(8439094-8439242)
chr2 (323-496)||(8411976-8412149)
chr2 (323-496)||(8434074-8434247)
chr2 (344-496)||(8395540-8395692)
chr2 (344-496)||(8405880-8406032)
chr2 (341-495)||(8417212-8417366)
chr2 (81-253)||(8403663-8403836)
chr2 (30-154)||(8376194-8376318)
chr2 (30-154)||(8405568-8405692)
chr2 (30-154)||(8395880-8396004)
chr2 (30-154)||(8430839-8430963)
chr2 (191-253)||(8368100-8368163)
chr2 (191-253)||(8401247-8401310)
chr2 (191-253)||(8422824-8422887)
chr2 (32-154)||(8411690-8411812)
chr2 (32-154)||(8433788-8433910)
chr2 (102-154)||(8416844-8416896)
chr2 (382-471)||(8403959-8404048)
chr2 (209-272)||(8405747-8405811)
chr2 (347-463)||(8417081-8417197)
chr2 (209-253)||(8376094-8376139)
chr2 (553-634)||(8395411-8395492)
chr2 (553-634)||(8406080-8406161)
chr2 (209-253)||(8411867-8411912)
chr2 (209-253)||(8431018-8431063)
chr2 (209-253)||(8433965-8434010)
chr2 (568-628)||(8368481-8368541)
chr2 (568-628)||(8400869-8400929)
chr2 (568-628)||(8422446-8422506)
[»] scaffold1738 (1 HSPs)
scaffold1738 (30-154)||(26-150)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 55335915 - 55336394
Alignment:
Q  18 tctatagcaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaa 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55335915 tctatagaaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaa 55336014  T
Q  118 atatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctcccaacatcttaaagaatccaccacagtttctatacat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  55336015 atatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctccaaacatcttaaaaaatccaccacagtttctatacat 55336114  T
Q  218 ttcaa-caccataccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggaaccatagctgaccaaaatccttcg 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  55336115 ttcaaacaccataccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggtaccatagctgaccaaaatccgtcg 55336214  T
Q  317 tcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336215 tcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtc 55336314  T
Q  417 tctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336315 tctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 55336394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 51 - 496
Target Start/End: Original strand, 55330516 - 55330956
Alignment:
Q  51 gattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctt 150  Q
    |||||||||||||| | ||| | |||||||||| ||||||| |||||||| ||||||||||||||||||| ||| |||||||||||  | || |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  151 tctcctcaagtgtgctttcaatactctctcccaacatcttaaagaatccaccacagtttctatacatttcaac-accataccaacttgtccaccatgctc 249  Q
    |||| || | |||    |||| | ||||| |||||| ||||| |||||||||||| ||||||||||||||||  |||||||||| |||||||||||| ||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttc 55330715  T
Q  250 aaaaccattgattgcacaagccattgatcctgccatcacaggaaccatagctgaccaaaatccttcgtcgtttcctacaaatgcagaacctattgctgca 349  Q
    |||| |||| | | ||  | | | ||| || ||||| | || ||| |||||||  ||| |   ||    |||||||||||||||||||||||| ||||||    
T  55330716 aaaagcattcactacagcacctaatgaaccagccattaaagcaactatagctg--caacagaatt----gtttcctacaaatgcagaacctatagctgca 55330809  T
Q  350 attccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaa 449  Q
    |||||||||||||||||||| ||  |||| | |||||| |||| ||| |||||||||||||||||||| ||||| |||||||| |||||  | || ||||    
T  55330810 attccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctttcataatcttcaatatctttcattttcacaa 55330909  T
Q  450 cttcaataacttccctcatttccatttctaattcttcactccatcca 496  Q
    ||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  55330910 cttcaataacttctctcaattccttttctaattcctcactccatcca 55330956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 551 - 634
Target Start/End: Original strand, 55336449 - 55336532
Alignment:
Q  551 gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtca 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336449 gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtca 55336532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 554 - 634
Target Start/End: Original strand, 55331017 - 55331097
Alignment:
Q  554 ggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtca 634  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtca 55331097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 328 - 493
Target Start/End: Original strand, 8431120 - 8431285
Alignment:
Q  328 aaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtct 427  Q
    ||||| ||| ||||| ||||||||||| | ||||||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| |||    
T  8431120 aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct 8431219  T
Q  428 tcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccat 493  Q
    |||| |||||| |||||||  ||||||| ||| |||||||||||||||||||||||||||||||||    
T  8431220 tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat 8431285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 323 - 492
Target Start/End: Complemental strand, 8376030 - 8375861
Alignment:
Q  323 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 422  Q
    ||||||||||  || || || ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||    
T  8376030 cctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcat 8375931  T
Q  423 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactcca 492  Q
    | ||||||  |||||| |||||||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  8375930 aatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactcca 8375861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 344 - 492
Target Start/End: Original strand, 8439094 - 8439242
Alignment:
Q  344 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 443  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||  |||||| ||||    
T  8439094 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctct 8439193  T
Q  444 ttacaacttcaataacttccctcatttccatttctaattcttcactcca 492  Q
    |||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  8439194 ttatcacttcaacaacttccctcatttccatttccaattctttactcca 8439242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 323 - 496
Target Start/End: Original strand, 8411976 - 8412149
Alignment:
Q  323 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 422  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8411976 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8412075  T
Q  423 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 496  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||||||||||||||||||||    
T  8412076 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca 8412149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 323 - 496
Target Start/End: Original strand, 8434074 - 8434247
Alignment:
Q  323 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 422  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8434074 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8434173  T
Q  423 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 496  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||||||||||||||||||||    
T  8434174 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca 8434247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 344 - 496
Target Start/End: Complemental strand, 8395692 - 8395540
Alignment:
Q  344 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 443  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8395692 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8395593  T
Q  444 ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 496  Q
    |||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  8395592 ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca 8395540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 344 - 496
Target Start/End: Original strand, 8405880 - 8406032
Alignment:
Q  344 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 443  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8405880 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8405979  T
Q  444 ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 496  Q
    |||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  8405980 ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca 8406032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 341 - 495
Target Start/End: Original strand, 8417212 - 8417366
Alignment:
Q  341 attgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttac 440  Q
    |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| |    
T  8417212 attgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttc 8417311  T
Q  441 tctttacaacttcaataacttccctcatttccatttctaattcttcactccatcc 495  Q
    |||| |  ||||||   ||||||  |||||||||||||||||||| |||||||||    
T  8417312 tcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatcc 8417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 8403663 - 8403836
Alignment:
Q  81 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 180  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||| ||||||||||||| | |||||||||||| ||||   |   |||||   |||||     
T  8403663 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattcaaatctttctcttcaataatttcttcaactgtctctt 8403762  T
Q  181 ccaacatcttaaagaatccaccacagtttctatacatttcaa-caccataccaacttgtccaccatgctcaaaa 253  Q
    |||| | || ||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  8403763 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaa 8403836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 8376318 - 8376194
Alignment:
Q  30 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 129  Q
    |||||||||| ||| | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  8376318 ccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 8376219  T
Q  130 tttctcttttttccaaatctttctc 154  Q
    |||||||||| || |||||||||||    
T  8376218 tttctcttttctctaaatctttctc 8376194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 8405568 - 8405692
Alignment:
Q  30 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 129  Q
    |||||||||| | | | ||| |||||||| |||||||  || |||||||| ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  8405568 ccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 8405667  T
Q  130 tttctcttttttccaaatctttctc 154  Q
    |||||||||| || |||||||||||    
T  8405668 tttctcttttctctaaatctttctc 8405692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 8396004 - 8395880
Alignment:
Q  30 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 129  Q
    |||||||||| | | | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  8396004 ccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 8395905  T
Q  130 tttctcttttttccaaatctttctc 154  Q
    |||||||||| || |||||||||||    
T  8395904 tttctcttttctctaaatctttctc 8395880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 8430839 - 8430963
Alignment:
Q  30 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 129  Q
    |||||||||| | | | ||| |||||||| |||||||  |||||||| || |||||| |||| ||   ||| ||||| ||||||||||||| ||| ||||    
T  8430839 ccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacactttttcccaattgcaaagccatcttcatttcaaatagctctccat 8430938  T
Q  130 tttctcttttttccaaatctttctc 154  Q
    |||||||||| || |||||||||||    
T  8430939 tttctcttttctctaaatctttctc 8430963  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 8368100 - 8368163
Alignment:
Q  191 aaagaatccaccacagtttctatacatttca-acaccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  8368100 aaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 8368163  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 8401310 - 8401247
Alignment:
Q  191 aaagaatccaccacagtttctatacatttca-acaccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  8401310 aaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 8401247  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 8422887 - 8422824
Alignment:
Q  191 aaagaatccaccacagtttctatacatttca-acaccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  8422887 aaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 8422824  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 8411690 - 8411812
Alignment:
Q  32 ttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattt 131  Q
    |||||||| ||| | ||| |||||||| |||||||  || ||||| |  ||||||||||| ||   ||| |||||||||| |||||||| ||| ||||||    
T  8411690 ttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattt 8411789  T
Q  132 tctcttttttccaaatctttctc 154  Q
    |||||||| || |||||||||||    
T  8411790 tctcttttctctaaatctttctc 8411812  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 8433788 - 8433910
Alignment:
Q  32 ttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccattt 131  Q
    |||||||| ||| | ||| |||||||| |||||||  || ||||| |  ||||||||||| ||   ||| |||||||||| |||||||| ||| ||||||    
T  8433788 ttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattt 8433887  T
Q  132 tctcttttttccaaatctttctc 154  Q
    |||||||| || |||||||||||    
T  8433888 tctcttttctctaaatctttctc 8433910  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 8416844 - 8416896
Alignment:
Q  102 gccattttcatttcaaatatctcaccattttctcttttttccaaatctttctc 154  Q
    ||||||||||||||||||| ||| |||||||||||||| || |||||||||||    
T  8416844 gccattttcatttcaaatagctctccattttctcttttctctaaatctttctc 8416896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 8403959 - 8404048
Alignment:
Q  382 actcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttc 471  Q
    ||||||||||||||| ||||| ||||| || | ||||||||| || ||||| ||||| ||||| || |||||||| || ||| |||||||    
T  8403959 actcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttc 8404048  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 8405747 - 8405811
Alignment:
Q  209 tctatacatttcaaca-ccataccaacttgtccaccatgctcaaaaccattgattgcacaagcca 272  Q
    |||||||||||||| | |||| ||||||||||||||||| ||||||  |||||||||| ||||||    
T  8405747 tctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagcca 8405811  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 463
Target Start/End: Original strand, 8417081 - 8417197
Alignment:
Q  347 gcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactcttta 446  Q
    |||||||| ||||||||||| ||||| ||||| | ||||||||  | |||||| ||||| |||||||| || | ||| ||||||   ||||| |||||||    
T  8417081 gcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttcagcatcttttctcttta 8417180  T
Q  447 caacttcaataacttcc 463  Q
      ||||||| |||||||    
T  8417181 tcacttcaacaacttcc 8417197  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 8376139 - 8376094
Alignment:
Q  209 tctatacatttcaaca-ccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||    
T  8376139 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8376094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 634
Target Start/End: Complemental strand, 8395492 - 8395411
Alignment:
Q  553 aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtca 634  Q
    ||||||||||  || ||| ||| ||||||||||  | ||||||||||| |||||||| |  ||||||||||| |||||||||    
T  8395492 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtca 8395411  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 634
Target Start/End: Original strand, 8406080 - 8406161
Alignment:
Q  553 aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtca 634  Q
    ||||||||||  || ||| ||| ||||||||||  | ||||||||||| |||||||| |  ||||||||||| |||||||||    
T  8406080 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtca 8406161  T

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Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 8411867 - 8411912
Alignment:
Q  209 tctatacatttcaaca-ccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||    
T  8411867 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8411912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 8431018 - 8431063
Alignment:
Q  209 tctatacatttcaaca-ccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||    
T  8431018 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 8433965 - 8434010
Alignment:
Q  209 tctatacatttcaaca-ccataccaacttgtccaccatgctcaaaa 253  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||    
T  8433965 tctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaa 8434010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 628
Target Start/End: Original strand, 8368481 - 8368541
Alignment:
Q  568 aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct 628  Q
    |||||||||||||  ||| || ||||||| |||| ||||||||| ||| ||||||||||||    
T  8368481 aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8368541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 8400929 - 8400869
Alignment:
Q  568 aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct 628  Q
    |||||||||||||  ||| || ||||||| |||| ||||||||| ||| ||||||||||||    
T  8400929 aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8400869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 8422506 - 8422446
Alignment:
Q  568 aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct 628  Q
    |||||||||||||  ||| || ||||||| |||| ||||||||| ||| ||||||||||||    
T  8422506 aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8422446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 150 - 26
Alignment:
Q  30 ccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatgccattttcatttcaaatatctcaccat 129  Q
    ||||| |||| ||| | ||| |||||||| |||||||  || ||||| || ||||||||||| ||   ||| ||||||||||||||||||| ||| ||||    
T  150 ccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccat 51  T
Q  130 tttctcttttttccaaatctttctc 154  Q
    |||||||||| || |||||||||||    
T  50 tttctcttttctctaaatctttctc 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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