View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14122_low_14 (Length: 253)
Name: NF14122_low_14
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14122_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 52263228 - 52262993
Alignment:
| Q |
1 |
ctcaaagtacccattatttgagaatcaatatcaagaaggatctgtctcacagcaccaacatcacctctttgagctgctagatgaagctcagtatcgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263228 |
ctcaaagtacccattatttgagaatcaatatcaagaaggatctgtctcacagcaccaacatcacctctttgagctgctagatgaagctcagtatcgttgt |
52263129 |
T |
|
| Q |
101 |
gacgacccgttacttgctttacgtacttcttcttccctgcttgatcgatccgttttcctgagtttgaaaggaccagagctggcgccgtcgctgacgacgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263128 |
gacgacccgttacttgctttacgtacttcttcttccctgcttgatcgatccgttttcctgagtttgaaaggaccagagctggcgccgtcgctgacgacgg |
52263029 |
T |
|
| Q |
201 |
agatggcgacggcgatatttcggaaagtgggttctg |
236 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
52263028 |
agatggcgacggtgatatttcggaaagtgggttctg |
52262993 |
T |
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