View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14122_low_15 (Length: 239)

Name: NF14122_low_15
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14122_low_15
NF14122_low_15
[»] chr3 (3 HSPs)
chr3 (50-173)||(7942102-7942229)
chr3 (115-221)||(23231713-23231819)
chr3 (184-217)||(37754050-37754083)
[»] chr7 (2 HSPs)
chr7 (79-221)||(27754856-27754998)
chr7 (79-154)||(39298368-39298443)
[»] chr6 (2 HSPs)
chr6 (142-221)||(24418160-24418239)
chr6 (182-219)||(19118335-19118372)
[»] chr2 (3 HSPs)
chr2 (79-137)||(33019471-33019529)
chr2 (79-155)||(33025869-33025945)
chr2 (79-219)||(33037365-33037505)
[»] chr5 (2 HSPs)
chr5 (112-221)||(20305097-20305206)
chr5 (112-221)||(20309501-20309610)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 7942102 - 7942229
Alignment:
Q  50 tcacctccaccgaaaccctaacttcatcaccactacccactctcaccttcgatctcatcgctgaaattc----tatgcagactacccgtaaagcatctcc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    ||||||||||| |||||||||||||||    
T  7942102 tcacctccaccgaaaccctaacttcatcaccactacccactctcaccttcgatctcattgctgaaattctatatatgcagactatccgtaaagcatctcc 7942201  T
Q  146 ttcaacttcgctgtctcaacaactcctt 173  Q
    ||||||||||||||||||||||||||||    
T  7942202 ttcaacttcgctgtctcaacaactcctt 7942229  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 23231819 - 23231713
Alignment:
Q  115 attctatgcagactacccgtaaagcatctccttcaacttcgctgtctcaacaactcctttaattatttaatctccgatccaaaattcgcaaagaaacacc 214  Q
    |||||||||||||| || || ||||  ||||| |||||||| |||||||  || ||||| |||    ||||||| ||||| || ||||||||||||||||    
T  23231819 attctatgcagacttcctgtcaagctcctcctacaacttcgatgtctcagtaagtccttcaataccctaatctctgatcccaatttcgcaaagaaacacc 23231720  T
Q  215 ttcgctt 221  Q
    |||||||    
T  23231719 ttcgctt 23231713  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 37754083 - 37754050
Alignment:
Q  184 atctccgatccaaaattcgcaaagaaacaccttc 217  Q
    |||||||||||||||||||||||||| |||||||    
T  37754083 atctccgatccaaaattcgcaaagaagcaccttc 37754050  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 27754856 - 27754998
Alignment:
Q  79 ccactacccactctcaccttcgatctcatcgctgaaattctatgcagactacccgtaaagcatctccttcaacttcgctgtctcaacaactcctttaatt 178  Q
    ||||| |||||||| || |||||||||||||  || ||||| ||||  || ||||| |||   || ||||||||| | || |||   || ||||||||||    
T  27754856 ccacttcccactcttacattcgatctcatcgaagagattctgtgcatgcttcccgtgaagttactacttcaactttgatgcctctgtaagtcctttaatt 27754955  T
Q  179 atttaatctccgatccaaaattcgcaaagaaacaccttcgctt 221  Q
     ||||||||||||||||||||| || |||||||||||||||||    
T  27754956 ctttaatctccgatccaaaatttgccaagaaacaccttcgctt 27754998  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 39298368 - 39298443
Alignment:
Q  79 ccactacccactctcaccttcgatctcatcgctgaaattctatgcagactacccgtaaagcatctccttcaacttc 154  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||  ||  |||| || ||||  |||||||||||||    
T  39298368 ccacttccctctcttaccttcgatctcatcgctgaaattctatctaggttaccagtgaagctcctccttcaacttc 39298443  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 24418239 - 24418160
Alignment:
Q  142 ctccttcaacttcgctgtctcaacaactcctttaattatttaatctccgatccaaaattcgcaaagaaacaccttcgctt 221  Q
    |||||||||||||||||||||  ||| ||||| ||||  |||||||| ||||| ||||||||||| || |||||||||||    
T  24418239 ctccttcaacttcgctgtctctgcaagtccttcaattcattaatctctgatcccaaattcgcaaacaagcaccttcgctt 24418160  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 19118335 - 19118372
Alignment:
Q  182 taatctccgatccaaaattcgcaaagaaacaccttcgc 219  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  19118335 taatttccgatcccaaattcgcaaagaaacaccttcgc 19118372  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 33019471 - 33019529
Alignment:
Q  79 ccactacccactctcaccttcgatctcatcgctgaaattctatgcagactacccgtaaa 137  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||| || |||||    
T  33019471 ccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaa 33019529  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 33025869 - 33025945
Alignment:
Q  79 ccactacccactctcaccttcgatctcatcgctgaaattctatgcagactacccgtaaagcatctccttcaacttcg 155  Q
    |||||||| |||||  | |||||||||||||||||||||||||||||||| || ||||| |  ||| ||||||||||    
T  33025869 ccactacctactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaactcctcattcaacttcg 33025945  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 33037365 - 33037505
Alignment:
Q  79 ccactacccactctcaccttcgatctcatcgctgaaattctatgcagactacccgtaaagcatctccttcaacttcgctgtctcaacaactcctttaatt 178  Q
    ||||||||||||||  | || |||||| |||||||||||||||||||||| || ||||| |  ||| |||||||||| ||||||   || ||  | ||||    
T  33037365 ccactacccactcttccgtttgatctcgtcgctgaaattctatgcagacttccggtaaaactcctcattcaacttcgatgtctctgtaagtctatcaatt 33037464  T
Q  179 atttaatctccgatccaaaattcgcaaagaaacaccttcgc 219  Q
      ||||| || ||||| |||||||| |||||||| ||||||    
T  33037465 cgttaatttctgatcctaaattcgctaagaaacatcttcgc 33037505  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 20305097 - 20305206
Alignment:
Q  112 gaaattctatgcagactacccgtaaagcatctccttcaacttcgctgtctcaacaactcctttaattatttaatctccgatccaaaattcgcaaagaaac 211  Q
    ||||||||||||||||| ||| | |||   ||| | |||||||| |||||   ||| ||||| |||| | ||||| ||||||| |||||||| ||||| |    
T  20305097 gaaattctatgcagacttcccattaagttactcttgcaacttcggtgtctttccaagtccttcaattctctaatcaccgatcccaaattcgccaagaagc 20305196  T
Q  212 accttcgctt 221  Q
    ||||||||||    
T  20305197 accttcgctt 20305206  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 20309501 - 20309610
Alignment:
Q  112 gaaattctatgcagactacccgtaaagcatctccttcaacttcgctgtctcaacaactcctttaattatttaatctccgatccaaaattcgcaaagaaac 211  Q
    ||||||||||||||||| ||| | |||   ||| | |||||||| |||||   ||| ||||| |||| | ||||| ||||||| |||||||| ||||| |    
T  20309501 gaaattctatgcagacttcccattaagttactcttgcaacttcggtgtctttccaagtccttcaattctctaatcaccgatcccaaattcgccaagaagc 20309600  T
Q  212 accttcgctt 221  Q
    ||||||||||    
T  20309601 accttcgctt 20309610  T

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