View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14122_low_2 (Length: 617)
Name: NF14122_low_2
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14122_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Original strand, 1959410 - 1959995
Alignment:
| Q |
19 |
gttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttagacatagaaatggtc |
118 |
Q |
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| T |
1959410 |
gttttctctgtctctaggtataaccatcacttcatcttctttaccgttcatcatctctattgctatccttcagattttgattttagacatagaaatggtc |
1959509 |
T |
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| Q |
119 |
tatcattttgactttgaaggaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatc |
218 |
Q |
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| T |
1959510 |
tatcattttgactttgaagaaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagattggtcgaattgggaatcggtcttacctataatc |
1959609 |
T |
|
| Q |
219 |
aggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaatgc |
318 |
Q |
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| T |
1959610 |
aggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaatgc |
1959709 |
T |
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| Q |
319 |
tacaaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatc |
418 |
Q |
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| T |
1959710 |
tacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatc |
1959809 |
T |
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| Q |
419 |
aaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataa |
518 |
Q |
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| T |
1959810 |
aaggcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataa |
1959909 |
T |
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| Q |
519 |
agttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
604 |
Q |
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| T |
1959910 |
agttttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
1959995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 322 - 604
Target Start/End: Complemental strand, 2023612 - 2023330
Alignment:
| Q |
322 |
aaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaag |
421 |
Q |
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| T |
2023612 |
aaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttccatcaag |
2023513 |
T |
|
| Q |
422 |
gcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagt |
521 |
Q |
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| T |
2023512 |
gcctcttgccatggagaaagaaacataatcatgcactgttgtttccctatactttggaggattatcttctgatactaattcctttataggaccataaagt |
2023413 |
T |
|
| Q |
522 |
tttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
604 |
Q |
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| T |
2023412 |
tttgttgatggctgaaaacttgtgctataaaagcttgcaactgatactcttggaccgacatgatttgctaccactctgtgctc |
2023330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 2024101 - 2023807
Alignment:
| Q |
20 |
ttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttagacatagaaatggtct |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
2024101 |
ttttctctatctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttaaacatagaaatgatct |
2024002 |
T |
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| Q |
120 |
atcattttgactttgaa-ggaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatc |
218 |
Q |
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| T |
2024001 |
accattttgattttgaagggaagaataaggtgtcctatgcaaacaagtagtcaaaactatactagatcagtcaagttgggaatcagtctgccctataatc |
2023902 |
T |
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| Q |
219 |
aggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaat |
316 |
Q |
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| T |
2023901 |
ggg---tacatgatgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaattgttgctgtcctctgacttgatggaat |
2023807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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