View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14122_low_3 (Length: 598)
Name: NF14122_low_3
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14122_low_3 |
 | |
|
| [»] scaffold1738 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Complemental strand, 8405976 - 8405428
Alignment:
| Q |
16 |
gaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat |
115 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8405976 |
gaaaagacgctgaagattatgacagacttggaaacatagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat |
8405877 |
T |
|
| Q |
116 |
tggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtgga |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
8405876 |
tggatctacatttattggcaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgcaatcaatacttttgaacatggtgga |
8405777 |
T |
|
| Q |
216 |
caagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggagagaaagatttagaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8405776 |
caagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga |
8405677 |
T |
|
| Q |
316 |
aaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaaatcagctgcttatcg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8405676 |
aaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatcaaaatcagcttcttatcg |
8405577 |
T |
|
| Q |
416 |
aatggaaggtgttgacatagatgaatttgccagcaaaatattctaagacatataaatcattcaattcattttttaatgtgttattctttcattctttgta |
515 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8405576 |
catggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacatataaattatttaattcattttttaatgtgttattctttcattctttgta |
8405477 |
T |
|
| Q |
516 |
agttacatgactttgtagaaaagaaactttctatacgacatagtttatt |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8405476 |
agttacatgactttgtagaaaagaaactttctatacgacatagtttatt |
8405428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Original strand, 8395596 - 8396124
Alignment:
| Q |
16 |
gaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat |
115 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395596 |
gaaaagacgctgaagattatgacagacttggaaacatagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat |
8395695 |
T |
|
| Q |
116 |
tggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtgga |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
8395696 |
tggatctacatttattggcaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgcaataaatacttttgaacatggtgga |
8395795 |
T |
|
| Q |
216 |
caagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggagagaaagatttagaga |
315 |
Q |
| |
|
||| |||||||||||||||||||||||| | ||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8395796 |
caaattggcatggtttttgaaatgtatagagcttctgatggtttattcaacttgatagaaacttcaattgaatcaactttgggagagaaagatttagaga |
8395895 |
T |
|
| Q |
316 |
aaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaaatcagctgcttatcg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8395896 |
aaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcg |
8395995 |
T |
|
| Q |
416 |
aatggaaggtgttgacatagatgaatttgccagcaaaatattctaagacatataaatcattcaattcattttttaatgtgttattctttcattctttgta |
515 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395996 |
catggaaggtgttgacatagatgaatttgcaagcaaaatattctaagacatataaattatttaattcattttttaatgtgttattctttcattctttgt- |
8396094 |
T |
|
| Q |
516 |
agttacatgactttgtagaaaagaaacttt |
545 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |
|
|
| T |
8396095 |
agttacctgactttatagaaaagaaacttt |
8396124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 8375898 - 8376345
Alignment:
| Q |
1 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
100 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8375898 |
ttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcac |
8375997 |
T |
|
| Q |
101 |
aggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatact |
200 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8375998 |
aggaattgcagctattggatcgacatttgtaggtagtggt---tctttggctgcttttgttcctcttttggctggttcattggcttctgtaattaatact |
8376094 |
T |
|
| Q |
201 |
tttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
8376095 |
tttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggtttcttcaacttgatagaaacttcaattgattcaactttgggag |
8376194 |
T |
|
| Q |
301 |
agaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8376195 |
agaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctcaaa |
8376294 |
T |
|
| Q |
401 |
atcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaa |
451 |
Q |
| |
|
||||||| ||| ||| ||||||||| | || || ||||||||||||||||| |
|
|
| T |
8376295 |
atcagcttcttgtcgcatggaaggtatcgaaattgatgaatttgccagcaa |
8376345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 451
Target Start/End: Complemental strand, 8412107 - 8411661
Alignment:
| Q |
2 |
tgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcaca |
101 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8412107 |
tgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcaca |
8412008 |
T |
|
| Q |
102 |
ggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatactt |
201 |
Q |
| |
|
||||||||||| ||||||||||||||| | || ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
8412007 |
ggaattgcagcaattggatctacatttgtaggcaat---agttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatactt |
8411911 |
T |
|
| Q |
202 |
ttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggaga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8411910 |
ttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggaga |
8411811 |
T |
|
| Q |
302 |
gaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
8411810 |
gaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaa |
8411711 |
T |
|
| Q |
402 |
tcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaa |
451 |
Q |
| |
|
|||||| ||| ||| |||||| || | || |||||||||||||||||||| |
|
|
| T |
8411710 |
tcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaa |
8411661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 451
Target Start/End: Complemental strand, 8434205 - 8433759
Alignment:
| Q |
2 |
tgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcaca |
101 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8434205 |
tgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcaca |
8434106 |
T |
|
| Q |
102 |
ggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatactt |
201 |
Q |
| |
|
||||||||||| ||||||||||||||| | || ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
8434105 |
ggaattgcagcaattggatctacatttgtaggcaat---agttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatactt |
8434009 |
T |
|
| Q |
202 |
ttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggaga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8434008 |
ttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggaga |
8433909 |
T |
|
| Q |
302 |
gaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
8433908 |
gaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaa |
8433809 |
T |
|
| Q |
402 |
tcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaa |
451 |
Q |
| |
|
|||||| ||| ||| |||||| || | || |||||||||||||||||||| |
|
|
| T |
8433808 |
tcagcttcttgtcgcatggaaagtatcgaaatagatgaatttgccagcaa |
8433759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 8431247 - 8430796
Alignment:
| Q |
1 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
8431247 |
ttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattactctc |
8431148 |
T |
|
| Q |
101 |
aggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatact |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
8431147 |
aggaattgcagctataggatctacatttattggcaat---agttctttggctgcttttgttcctct------------attggcttctgtaattaatact |
8431063 |
T |
|
| Q |
201 |
tttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
8431062 |
tttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgatagaaacttcaattgaatcaactttgggag |
8430963 |
T |
|
| Q |
301 |
agaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
8430962 |
agaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgtatcagagctaagggaacttgcatcaaa |
8430863 |
T |
|
| Q |
401 |
atcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaaaatattctaagacata |
467 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
8430862 |
atcagcttcttatcgcatggaaggtgttgacatagatgaattttccagcaaaattttctaagacata |
8430796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 8417189 - 8416745
Alignment:
| Q |
1 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||| || |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8417189 |
ttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggccattactcac |
8417090 |
T |
|
| Q |
101 |
aggaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatact |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
8417089 |
aggaattgccgctattggatctacatttataggcaatggc---tctttggctgcctttgttcctctattggctggttcattggcttctgcagttaatact |
8416993 |
T |
|
| Q |
201 |
tttgagcatggtggacaagttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8416992 |
tttgagcatggtggacaagttggcatggtttttgaaatgtagag--cttctggtggttt-ttcaacttgttagaaacttcaattgaatcaactttgggag |
8416896 |
T |
|
| Q |
301 |
agaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||| |||| |
|
|
| T |
8416895 |
agaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaa |
8416796 |
T |
|
| Q |
401 |
atcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaa |
451 |
Q |
| |
|
||||||| ||| ||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
8416795 |
atcagcttcttgtcgcatcgaaggtgttgacatagatgaattttccagcaa |
8416745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8439205 - 8439085
Alignment:
| Q |
1 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
100 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8439205 |
ttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcac |
8439106 |
T |
|
| Q |
101 |
aggaattgcagctattggatc |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8439105 |
aggaattgcagctattggatc |
8439085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 8417325 - 8417201
Alignment:
| Q |
2 |
tgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcaca |
101 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8417325 |
tgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcaca |
8417226 |
T |
|
| Q |
102 |
ggaattgcagctattggatctacat |
126 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
8417225 |
ggaattgcagcaattggatctacat |
8417201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 8368357 - 8368120
Alignment:
| Q |
3 |
gaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacag |
102 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||| ||| | |||||| | | |||||||||||| |||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
8368357 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggctattgcaggaccattactcactg |
8368258 |
T |
|
| Q |
103 |
gaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttt |
202 |
Q |
| |
|
||||||||||| | || || |||||| ||||| | ||| || ||||| | | || ||| | ||||||| |||||||| ||||||||||| |||| |
|
|
| T |
8368257 |
gaattgcagctgtggggtccacatttgttggtcaaggt---tcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttt |
8368161 |
T |
|
| Q |
203 |
tgagcatggtggacaagttggcatggtttttgaaatgtata |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8368160 |
tgagcatggtggacaagttggtatggtttctgaaatgtata |
8368120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 8401053 - 8401290
Alignment:
| Q |
3 |
gaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacag |
102 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||| ||| | |||||| | | |||||||||||| |||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
8401053 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggctattgcaggaccattactcactg |
8401152 |
T |
|
| Q |
103 |
gaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttt |
202 |
Q |
| |
|
||||||||||| | || || |||||| ||||| | ||| || ||||| | | || ||| | ||||||| |||||||| ||||||||||| |||| |
|
|
| T |
8401153 |
gaattgcagctgtggggtccacatttgttggtcaaggt---tcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttt |
8401249 |
T |
|
| Q |
203 |
tgagcatggtggacaagttggcatggtttttgaaatgtata |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8401250 |
tgagcatggtggacaagttggtatggtttctgaaatgtata |
8401290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 8422630 - 8422867
Alignment:
| Q |
3 |
gaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacag |
102 |
Q |
| |
|
||||| || |||||||||||| | ||||||||||| ||| | |||||| | | |||||||||||| |||| ||||| |||||||| ||||| ||||| | |
|
|
| T |
8422630 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaataagacattggctattgcaggaccattactcactg |
8422729 |
T |
|
| Q |
103 |
gaattgcagctattggatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttt |
202 |
Q |
| |
|
||||||||||| | || || |||||| ||||| | ||| || ||||| | | || ||| | ||||||| |||||||| ||||||||||| |||| |
|
|
| T |
8422730 |
gaattgcagctgtggggtccacatttgttggtcaaggt---tcattggcatctatagtacctgttatggctggagcattggctactgctgttaattcttt |
8422826 |
T |
|
| Q |
203 |
tgagcatggtggacaagttggcatggtttttgaaatgtata |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8422827 |
tgagcatggtggacaagttggtatggtttctgaaatgtata |
8422867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 8403845 - 8403793
Alignment:
| Q |
191 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtata |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8403845 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtata |
8403793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 8404032 - 8403918
Alignment:
| Q |
1 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
100 |
Q |
| |
|
|||||||| | |||||||||||| |||| |||||||| ||| | || || || || || ||||| ||||||||||| |||||| ||| || ||| | || |
|
|
| T |
8404032 |
ttgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaac |
8403933 |
T |
|
| Q |
101 |
aggaattgcagctat |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8403932 |
aggaattgcagctat |
8403918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 8401363 - 8401418
Alignment:
| Q |
316 |
aaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagt |
371 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||| | |||||||||||| |
|
|
| T |
8401363 |
aaagagaaaatggagatttatttgaaattaaattggctttgaaattgggaagaagt |
8401418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 8403737 - 8403612
Alignment:
| Q |
299 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatca |
398 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| | ||||| ||||| || || ||||| ||||||||||||||| || ||||||| ||||| ||| |
|
|
| T |
8403737 |
agagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctca |
8403638 |
T |
|
| Q |
399 |
aaatcagctgcttatcgaatggaagg |
424 |
Q |
| |
|
||||| | || ||||| |||||||| |
|
|
| T |
8403637 |
aaatctgatgtctatcggatggaagg |
8403612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 275 - 451
Target Start/End: Original strand, 1 - 177
Alignment:
| Q |
275 |
aacttcgattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgta |
374 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1 |
aacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgta |
100 |
T |
|
| Q |
375 |
tcagagctgagagaacttgcatcaaaatcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaa |
451 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
tcagagctgagggaacttgcatcaaaatcagcttcttgtcgcatcgaaggtgttgacatagatgaatttgccagcaa |
177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 55330898 - 55330474
Alignment:
| Q |
18 |
aaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattg |
117 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| || ||| | || |||||||| |||| ||| || ||||| ||||| |||||||||||||| | |
|
|
| T |
55330898 |
aaagatattgaagattatgaaagacttggaaatatagcattaaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctatag |
55330799 |
T |
|
| Q |
118 |
gatctacatttattggtaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgctgttaatacttttgagcatggtggaca |
217 |
Q |
| |
|
| ||| ||||| | || || | |||| | || || | ||| || | ||||||||||||| | | ||| || ||| ||||||| ||||||||||| |
|
|
| T |
55330798 |
gttctgcatttgtaggaaac---aattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggaca |
55330702 |
T |
|
| Q |
218 |
agttggcatggtttttgaaatgtataaaacttcttctggtttcttcaacttgttagaaacttcgattgaatcaactttgggagagaaagatttagagaaa |
317 |
Q |
| |
|
| |||| ||||| ||||||||||||| || || | ||| ||| | || |||| ||| | |||| ||| |||| |||||||||||| |||| |
|
|
| T |
55330701 |
aattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatg |
55330602 |
T |
|
| Q |
318 |
agagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaaaatcagctgcttatcgaa |
417 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || ||| ||||||| ||||| |||||||||| | ||| ||||| |
|
|
| T |
55330601 |
agagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatcaggttcttgtcgaa |
55330502 |
T |
|
| Q |
418 |
tggaaggtgttgacatagatgaatttgc |
445 |
Q |
| |
|
|| |||| |||| | ||||||||||| |
|
|
| T |
55330501 |
tgaaaggaattgatgttgatgaatttgc |
55330474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 300 - 452
Target Start/End: Complemental strand, 55336051 - 55335899
Alignment:
| Q |
300 |
gagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcagttgggaagaagtgtatcagagctgagagaacttgcatcaa |
399 |
Q |
| |
|
||||||||||| || |||||||||||||| ||| ||||||||||||||||||| ||| ||| ||||||||||| || ||||| ||| ||||||| |||| |
|
|
| T |
55336051 |
gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgagctaagacaacttgcttcaa |
55335952 |
T |
|
| Q |
400 |
aatcagctgcttatcgaatggaaggtgttgacatagatgaatttgccagcaaa |
452 |
Q |
| |
|
|||| ||||| | | | |||||||| || ||||||||||||||||||||| |
|
|
| T |
55335951 |
aatctgctgcctgttgcatggaaggaatttctatagatgaatttgccagcaaa |
55335899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 55336353 - 55336242
Alignment:
| Q |
1 |
ttgaagtgataaagagaaaagatgttgaagattatgacagacttggaaacatagcgttgaagataaacaagagtttggcaattgcagggccattgctcac |
100 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||||| ||||||| ||||| ||||| ||||| |
|
|
| T |
55336353 |
ttgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcac |
55336254 |
T |
|
| Q |
101 |
aggaattgcagc |
112 |
Q |
| |
|
||||||||||| |
|
|
| T |
55336253 |
tggaattgcagc |
55336242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 55336151 - 55336108
Alignment:
| Q |
200 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtata |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtata |
55336108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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