View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14122_low_5 (Length: 580)
Name: NF14122_low_5
Description: NF14122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14122_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 10 - 565
Target Start/End: Complemental strand, 41552250 - 41551695
Alignment:
| Q |
10 |
aagaatattcatctaaggttacatatgaaaattacttaaaagcctctcttgactaatttagattatagacacaacatattttctgagaaaattcataagg |
109 |
Q |
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| T |
41552250 |
aagaaaattcatgtaaggatacatatgaaaattacttaaaagcctctcttgactaatttagattatagacacaacatattttctgagaaaattcataagg |
41552151 |
T |
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| Q |
110 |
atatatatgaaaattacataaaagcatatcttgactaatttagattataaacgcaacatatttggatagaagctacattttggttaggcaatgtcaaaat |
209 |
Q |
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| T |
41552150 |
atatatatgaaaattacataaaagcatatcttgactaatttagattataaacgcaacatatttggatagaagctacattttggttaggcaatgtcaaaat |
41552051 |
T |
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| Q |
210 |
atctattaagaacagacatggacacgtcgacacaacaccgacaataatttgatgacataattcaattttcatatgtgtcggtgtcggatatgatacctat |
309 |
Q |
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| T |
41552050 |
atctattaagaacagacatggacacgtcgacacaacaccaacaataatttgatgacataattcaattttcatatgtgtcggtgtcggatatgatacttat |
41551951 |
T |
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| Q |
310 |
ccgacacctgaggcgtgtttgtgcttcataaaaatgtggacacctactcaaaggagattcgaactttagtttgccgagactaacttttttactagattca |
409 |
Q |
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| T |
41551950 |
ccgacacctgaggcgtgtttgtgcttcataaaaatgtggacacctactcaaaggagattcgaactttagtttgccgagactaacttttttactagattca |
41551851 |
T |
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| Q |
410 |
acccctgtaggttgaagttgaaggctacatatataacatatacacatgcatttctaaaaaataataaatacaacaatacaatgtcatgatatgaggtaac |
509 |
Q |
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| T |
41551850 |
acccctgtaggttgaagttgaaggctacatatataacatatacacatgcatttctaaaaaataataaatacaacaatacaatgtcatgatatgaggtaac |
41551751 |
T |
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| Q |
510 |
caaacaatatacctgttgataacctcctcttcttgtgacctccaagtaaaagaggt |
565 |
Q |
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| T |
41551750 |
caaacaatatacctggtgataacctcctcttcttgtgacctccaagtaaaagaggt |
41551695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 506 - 565
Target Start/End: Complemental strand, 34255538 - 34255479
Alignment:
| Q |
506 |
taaccaaacaatatacctgttgataacctcctcttcttgtgacctccaagtaaaagaggt |
565 |
Q |
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| T |
34255538 |
taaccgaacaatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggt |
34255479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 37556946 - 37556880
Alignment:
| Q |
29 |
tacatatgaaaattacttaa----aagcctctcttgactaatttagat--tatagacacaacatatt |
89 |
Q |
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| T |
37556946 |
tacatatgaaaattacttaattaaaagcctctcttgactaatttatattatatagacacaacatatt |
37556880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 565
Target Start/End: Complemental strand, 37556785 - 37556738
Alignment:
| Q |
518 |
atacctgttgataacctcctcttcttgtgacctccaagtaaaagaggt |
565 |
Q |
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| T |
37556785 |
atacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggt |
37556738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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