View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14123_high_5 (Length: 275)
Name: NF14123_high_5
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_high_5 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 18143970 - 18144229
Alignment:
| Q |
1 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18143970 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
18144069 |
T |
|
| Q |
101 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144070 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
18144169 |
T |
|
| Q |
201 |
ctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18144170 |
ctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagt |
18144229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 48185286 - 48185545
Alignment:
| Q |
1 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |
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| T |
48185286 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccgcag |
48185385 |
T |
|
| Q |
101 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
48185386 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcggattt |
48185485 |
T |
|
| Q |
201 |
ctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagt |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
48185486 |
ctaacaactagaatggttgaaattaataagatagcaattacaacccaagacgtaataagt |
48185545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
152 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
243 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9293780 - 9294013
Alignment:
| Q |
1 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293780 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
9293879 |
T |
|
| Q |
101 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293880 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
9293979 |
T |
|
| Q |
201 |
ctaacaactagaatggttgaaattaataagatag |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9293980 |
ctaacaactagaatggttgaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 24489237 - 24489470
Alignment:
| Q |
1 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24489237 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
24489336 |
T |
|
| Q |
101 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24489337 |
accatattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggattt |
24489436 |
T |
|
| Q |
201 |
ctaacaactagaatggttgaaattaataagatag |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
24489437 |
ctaacaactagaatggttgaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 231415 - 231246
Alignment:
| Q |
3 |
ccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggac |
102 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |||| |
|
|
| T |
231415 |
ccatggggtaactctataattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaacccagggac |
231316 |
T |
|
| Q |
103 |
catattcttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctg |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
231315 |
catattcttctccaatctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctg |
231246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 25375 - 25503
Alignment:
| Q |
1 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaatt-----------cgaaacaaaaataaataggaacaaagttccaataaac |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25375 |
ctccatgaggtaactttataattttccaaggcaaaagaacccctgaccaattcgaaacaaattcgaaacaaaaataaataggaacaaagttccaataaac |
25474 |
T |
|
| Q |
90 |
ggaacccacggaccatattcttctccaat |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
25475 |
ggaacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 34676485 - 34676575
Alignment:
| Q |
168 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataag |
259 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataag |
34676575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 22966007 - 22965856
Alignment:
| Q |
10 |
gtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattc |
109 |
Q |
| |
|
|||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||| |
|
|
| T |
22966007 |
gtaactttataattttt-aaggcaaaataatctttgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattc |
22965909 |
T |
|
| Q |
110 |
ttctccaatctgagttttgctcacgtctcggatgaattcaaggacatattcaa |
162 |
Q |
| |
|
||||| ||| |||||||| || || | ||| |||||||||||||||||||||| |
|
|
| T |
22965908 |
ttctctaatttgagtttttcttacttatcgaatgaattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8868195 - 8868319
Alignment:
| Q |
1 |
ctccatgaggtaactttataattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacgg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||||||||| | |
|
|
| T |
8868195 |
ctccatgagataactttataattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatggaacccactg |
8868292 |
T |
|
| Q |
101 |
accatattcttctccaatctgagtttt |
127 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
8868293 |
accatattcttctccaatctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
87 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
134 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
Back To:
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