View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14123_high_8 (Length: 260)
Name: NF14123_high_8
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 46473027 - 46473149
Alignment:
| Q |
96 |
ttacaaaaaagagttatttgataaagaatagatacatgtgtactcttaaataatattcgaagttgcaggaaacaaattatatgcaaatattacacataca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46473027 |
ttacaaaaaagagttatttgataaagaatagatacatgtgtactcttaaataatattcaaagttacaggaaacaaattatatgcaaatattacacataca |
46473126 |
T |
|
| Q |
196 |
agcaagttaaagtatataatatt |
218 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46473127 |
agcaagttaaagtatataatatt |
46473149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 46472889 - 46472982
Alignment:
| Q |
17 |
caaagctgtgaattatattatatgatttgtaacgtgttcacaaaataataaaatgttacataattttttgtgattttgtttacaaaaaagagtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472889 |
caaagctgtgaattatattatatgatttgtaatgtgttcacaaaataataaaatgttacataattttttgtgattttgtttacaaaaaagagtt |
46472982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University