View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14123_low_10 (Length: 275)
Name: NF14123_low_10
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 37076417 - 37076578
Alignment:
| Q |
3 |
ttcacaattaaagtaacatatcccaccgttcttgattataaagatcaaaatcacgataaactcgttgatcgtttgcaaaaactattcaagttttctttta |
102 |
Q |
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| T |
37076417 |
ttcacaattaaagtaacatatccctcctttcttgattataaagattaaaatcacgataaactcgttgatcgtttgcaaaaactattcaagttttctttta |
37076516 |
T |
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| Q |
103 |
atcatgaaaaaatctgttaagccaggacctgcataattgaattctaatgagttcctgaaatt |
164 |
Q |
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| T |
37076517 |
atcatgaaaaaatctgttaagccaggacctgcataattgaattctaatgagttccagaaatt |
37076578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 37076632 - 37076679
Alignment:
| Q |
216 |
ctagtatctttggtgtaaagttgctgatcttaagtatgtatgatatat |
263 |
Q |
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| T |
37076632 |
ctagtatctttggtgtaaagttgctgatcttgagtatgtaggatatat |
37076679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 37074265 - 37074297
Alignment:
| Q |
60 |
aaactcgttgatcgtttgcaaaaactattcaag |
92 |
Q |
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| T |
37074265 |
aaactcgttgatcgtttgcaaaaactattcaag |
37074297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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