View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14123_low_11 (Length: 271)
Name: NF14123_low_11
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_11 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 53685066 - 53685335
Alignment:
| Q |
2 |
gaacaatgtataatatatgtaggggtcgaagtcaagtggtaggaacaatatataatatatacaggggtcaaagttcgaacctcgaacatttcacttattt |
101 |
Q |
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| T |
53685066 |
gaacaatgtataatatatgtaggggtcgaagtcaagtggtatgaacaatatataatatatgcaggggtcgaagttcgaacctcgaacatttcacttattc |
53685165 |
T |
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| Q |
102 |
accttaaaagatgaatttctagccaccaactgaaaaaccgagttatttataaggataaaaaacttatgtaactaaataaataatttatttttccaaaact |
201 |
Q |
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| T |
53685166 |
accttaaaagatgaatttctagccaccaactgaaaaaccgagttatttataagggtaaaaaacttatgtaactaaataaataatttatttttccaaaact |
53685265 |
T |
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| Q |
202 |
ctcatgtcaattttatttagagcaaacgaataagatcgctcatgctttaatacagatagtcacatatcac |
271 |
Q |
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| T |
53685266 |
ctcatgtcgattttatttagagcaaatgaataagatcgctcatgctttaatacggatagtcacatctcac |
53685335 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 48145101 - 48145067
Alignment:
| Q |
93 |
cacttatttaccttaaaagatgaatttctagccac |
127 |
Q |
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| T |
48145101 |
cacttatttaccttaaaagatgaatttctaaccac |
48145067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 20160804 - 20160840
Alignment:
| Q |
94 |
acttatttaccttaaaagatgaatttctagccaccaa |
130 |
Q |
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| T |
20160804 |
acttattcaccttaaaaggtgaatttctagccaccaa |
20160840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 19208 - 19245
Alignment:
| Q |
33 |
tcaagtggtaggaacaatatataatatatacaggggtc |
70 |
Q |
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| T |
19208 |
tcaattggtaggaacaatacataatatatacaggggtc |
19245 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 48821016 - 48821061
Alignment:
| Q |
74 |
gttcgaacctcgaacatttcacttatttaccttaaaagatgaattt |
119 |
Q |
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| T |
48821016 |
gttcgaacctcgaacacttcacttattcaccttataaggtgaattt |
48821061 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 31525429 - 31525377
Alignment:
| Q |
33 |
tcaagtggtaggaacaatatataatatatacaggggtcaaagttcgaacctcg |
85 |
Q |
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| T |
31525429 |
tcaattggtatgaacaatatataatatatacaaggttcgaggttcgaacctcg |
31525377 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 884302 - 884350
Alignment:
| Q |
75 |
ttcgaacctcgaacatttcacttatttacctt-aaaagatgaatttcta |
122 |
Q |
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| T |
884302 |
ttcgaacctcgaacatctcacttatttactttaaaaaggtgaatttcta |
884350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22169722 - 22169754
Alignment:
| Q |
1 |
tgaacaatgtataatatatgtaggggtcgaagt |
33 |
Q |
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| T |
22169722 |
tgaacattgtataatatatgtaggggtcgaagt |
22169754 |
T |
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