View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14123_low_16 (Length: 244)
Name: NF14123_low_16
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 37076212 - 37076433
Alignment:
| Q |
18 |
agggagaagaagtaagggtaaaccaaagttgtttgaagctatctcagcaaatctacatctatttataatatttgtaattgattctctaattctttacgtg |
117 |
Q |
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| T |
37076212 |
agggagaagaagtaagggtaaaccaaagttgtttgaagctagctcagcaaatctgcgtctatttataatatttgtgattgattctctaattctttacgtg |
37076311 |
T |
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| Q |
118 |
tgaaatgttaagctgaaaaaggaaaaagataagctannnnnnnnnnnnnnnnnccttccttttattccatttgtcatgtgcaaataactaaagaacaatt |
217 |
Q |
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| T |
37076312 |
tgcaatgttatgctgaaaaaggaaagagataagcta-----ctctctctctctctctccttttattccatttgtcatgtgcaaataactaaagaacaatt |
37076406 |
T |
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| Q |
218 |
ctttcctcttttcacaattaaagtaac |
244 |
Q |
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| T |
37076407 |
ctttcctctgttcacaattaaagtaac |
37076433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 37082761 - 37082813
Alignment:
| Q |
73 |
catctatttataatatttgtaattgattctctaattctttacgtgtgaaatgtt |
126 |
Q |
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| T |
37082761 |
catctatttataatatta-taattgattatctaattctttacgtgtgtaatgtt |
37082813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 37073955 - 37074005
Alignment:
| Q |
20 |
ggagaagaagtaagggtaaaccaaagttgtttgaagctatctcagcaaatct |
71 |
Q |
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| T |
37073955 |
ggagaagaagtaagggtaaaccaaa-ttgtctgaagctagctcaccaaatct |
37074005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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