View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14123_low_2 (Length: 820)
Name: NF14123_low_2
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 14 - 820
Target Start/End: Complemental strand, 10055351 - 10054544
Alignment:
| Q |
14 |
cataggacatgtttacctggttggtaatcagagaaacatacaacttgattgctgttaatgctttcaaatccacacattagctgatgtgattcacaataac |
113 |
Q |
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| T |
10055351 |
cataggacatgtttacctggttggtaatcagagaaacatacaacttgattgctgttaatgctttcaaatccacacattagctgatgtgattcacaataac |
10055252 |
T |
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| Q |
114 |
tgcagtcaggtttatcccatgttaattgaagatctgcactaaggtcatctctgagattttcatgaaaccgttctggtcttgcaattggaactgaaagatt |
213 |
Q |
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| T |
10055251 |
tgcagtcaggtttatcccatgttaattgaagatctgcactaaggtcatctctgagattttcttgaaaccgttctggtcttgcaattggaactgaaagatt |
10055152 |
T |
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| Q |
214 |
ttttataacagagcaaccagatagagaattgacaaacttaactgaaggaatggctgatacaaaatatgttgaattactaagacaatcaatgggaatgaat |
313 |
Q |
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| T |
10055151 |
ttttataacagagcaaccagatagagaattgacaaagctaactgaacgaatggctgatacaaaatatgttgaattactaagacaatcaatgggaatgaat |
10055052 |
T |
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| Q |
314 |
tgtgacccaatattctgagatgaacagcctaagaatgtgtagtcacgactaaaagaagcaatgaaaggagaatttgaaaaattgaggcttagaagacgtt |
413 |
Q |
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| T |
10055051 |
tgtgacccaatattctgagatgaacagcctaagaatgtgtagtcacgactaaaagaagcaatgaaaggagaatttgaaaaattgagtcttagaagacgtt |
10054952 |
T |
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| Q |
414 |
ttggaagacaatcatcgggatcgtagagttgtatctgttgtgtgagatagtttatgctgcgtacgtagaattcttcagagtaaggaagttttagaattgt |
513 |
Q |
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| T |
10054951 |
ttggaagacaatcatcgggatcgtagagttgtatctgttgtgtgagatagtttatgctgcgtacgtagaattcttcagagtaaggaagttttagaattgt |
10054852 |
T |
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| Q |
514 |
tttgctatcattggtacaacttaagttgaaaccaggatagccacaaaaaggatattgctcacctaattgaaaggggaaacgaattaggaaactattgttg |
613 |
Q |
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| T |
10054851 |
tttgctatcattggtacaacttaagttgaaaccaggatagacacaataaggatattgctcacctaattgaaaggggaaacgaattaggaaactattgttg |
10054752 |
T |
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| Q |
614 |
ccacacaaagaaaaagggcaatcgtttaaggcgtatacaacaggaaagattaagtaaaaaaggaccttcaagatgtccattacttctcagacttgcaaat |
713 |
Q |
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| T |
10054751 |
ccacacaaagaaaaagggcaatcgtttaaggcgtatacaacaggaaagattaagtaaaaaaggaccttcaagatgtccattacttctcagacttgcaaat |
10054652 |
T |
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| Q |
714 |
ctgcggtaggaaagcatcaacttataacttataagatgatgaaagttgaaaccatttttta-ttttaaattcgatacaattttcaacgtagtataaaaag |
812 |
Q |
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| T |
10054651 |
ctgcggtaggaaagcatcaacttataacttataagatgatgaaagttgaaaccatattttatttttaaattcgatacaattttcaacgtagtataaaaag |
10054552 |
T |
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| Q |
813 |
tcaaataa |
820 |
Q |
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| T |
10054551 |
tcaaataa |
10054544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 577
Target Start/End: Original strand, 48473142 - 48473225
Alignment:
| Q |
494 |
taaggaagttttagaattgttttgctatcattggtacaacttaagttgaaaccaggatagccacaaaaaggatattgctcacct |
577 |
Q |
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| T |
48473142 |
taaggaagtgttagaaccgttttgctatcatcagtacaacttaatttgaaaccaggatagctacactaaggatgttgatcacct |
48473225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 565
Target Start/End: Original strand, 48475671 - 48475841
Alignment:
| Q |
395 |
ttgaggcttagaagacgttttggaagacaatcatcgggatcgtagagttgtatctgttgtgtgagatagtttatgctgcgtacgtagaattcttcagagt |
494 |
Q |
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| T |
48475671 |
ttgagacttagaagacgatttggaaggcaacgatgagggtcatagacttgtatgtggtgttcgagatagttgattttgcgaacatagaacactcctgaat |
48475770 |
T |
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| Q |
495 |
aaggaagttttagaattgttttgctatcattggtacaacttaagttgaaaccaggatagccacaaaaagga |
565 |
Q |
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| T |
48475771 |
aaggaagtgttagaacagttttgccatcattagtacaagacaatttgaaaccaggatagccacaataagga |
48475841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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