View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14123_low_20 (Length: 212)
Name: NF14123_low_20
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_20 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 7666277 - 7666465
Alignment:
| Q |
24 |
cttgatttgataatcaaaaatatagctagtgaaattattactacacttgttataacaataccaataatctgcaatgacttatgcttactgttatcaggca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666277 |
cttgatttgataatcaaaaatatagctagtgaaattattactacacttgttataacaataccaataatctgcaatgacttatgcttactgttatcaggca |
7666376 |
T |
|
| Q |
124 |
cagtcacaataacattacttggaataggatttgtttgttgcactgtattgttggtaactgatgtattactaatattatttgcatcaata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666377 |
cagtcacaataacattacttggaataggatttgtttgttgcactgtattgttggtaactgatgtattactaatattatttgcatcaata |
7666465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University