View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14123_low_4 (Length: 594)

Name: NF14123_low_4
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14123_low_4
NF14123_low_4
[»] chr4 (37 HSPs)
chr4 (38-584)||(1600439-1600987)
chr4 (71-267)||(55908576-55908772)
chr4 (29-244)||(8183901-8184118)
chr4 (67-258)||(12121314-12121505)
chr4 (67-192)||(570402-570524)
chr4 (70-195)||(53761692-53761817)
chr4 (71-263)||(546968-547160)
chr4 (29-244)||(1548297-1548512)
chr4 (71-232)||(7225766-7225927)
chr4 (407-488)||(55908337-55908418)
chr4 (47-204)||(553508-553667)
chr4 (71-202)||(659764-659895)
chr4 (140-207)||(3438474-3438541)
chr4 (29-244)||(8186962-8187179)
chr4 (142-207)||(1533898-1533963)
chr4 (43-204)||(1524397-1524560)
chr4 (67-209)||(1489267-1489409)
chr4 (142-207)||(1495830-1495895)
chr4 (70-229)||(644884-645043)
chr4 (32-196)||(1519062-1519227)
chr4 (67-265)||(532240-532432)
chr4 (143-205)||(1537677-1537739)
chr4 (406-564)||(3438186-3438343)
chr4 (148-205)||(558630-558687)
chr4 (143-207)||(6006455-6006519)
chr4 (141-206)||(1552676-1552738)
chr4 (67-125)||(1537757-1537815)
chr4 (143-207)||(1517407-1517471)
chr4 (73-113)||(1545830-1545870)
chr4 (121-205)||(12120052-12120136)
chr4 (141-196)||(641040-641095)
chr4 (31-115)||(1513407-1513493)
chr4 (79-209)||(370983-371113)
chr4 (143-197)||(21834296-21834350)
chr4 (164-209)||(1505017-1505062)
chr4 (407-488)||(1527812-1527893)
chr4 (408-460)||(641321-641373)
[»] chr8 (10 HSPs)
chr8 (24-255)||(18315133-18315366)
chr8 (29-263)||(32151312-32151545)
chr8 (24-244)||(17636268-17636494)
chr8 (24-247)||(34936031-34936256)
chr8 (67-159)||(21235609-21235701)
chr8 (70-204)||(28246206-28246340)
chr8 (29-185)||(27922519-27922674)
chr8 (117-207)||(44736578-44736668)
chr8 (378-488)||(17627668-17627778)
chr8 (222-263)||(17627911-17627952)
[»] chr6 (26 HSPs)
chr6 (71-244)||(7119212-7119382)
chr6 (71-244)||(7131690-7131860)
chr6 (30-196)||(6402872-6403040)
chr6 (407-477)||(7993805-7993875)
chr6 (29-204)||(11936186-11936363)
chr6 (29-204)||(11948166-11948343)
chr6 (71-196)||(6432216-6432341)
chr6 (71-196)||(6594525-6594650)
chr6 (71-267)||(6394919-6395112)
chr6 (140-260)||(9411476-9411596)
chr6 (71-267)||(6416021-6416214)
chr6 (71-267)||(6426566-6426759)
chr6 (29-196)||(6585156-6585325)
chr6 (71-196)||(7994101-7994226)
chr6 (144-195)||(8913904-8913955)
chr6 (377-483)||(6588949-6589055)
chr6 (71-267)||(6589174-6589367)
chr6 (71-261)||(6410061-6410248)
chr6 (413-479)||(6596567-6596633)
chr6 (142-196)||(14820819-14820873)
chr6 (71-196)||(6596847-6596972)
chr6 (71-111)||(12102321-12102361)
chr6 (29-193)||(6423228-6423394)
chr6 (446-566)||(8913599-8913723)
chr6 (30-111)||(9411367-9411450)
chr6 (407-479)||(6432557-6432629)
[»] chr3 (6 HSPs)
chr3 (71-267)||(13470583-13470776)
chr3 (29-196)||(51113700-51113869)
chr3 (70-267)||(51764291-51764485)
chr3 (24-181)||(51120827-51120986)
chr3 (79-265)||(514578-514764)
chr3 (70-229)||(1657305-1657460)
[»] chr2 (4 HSPs)
chr2 (141-267)||(1037512-1037638)
chr2 (33-262)||(32785628-32785856)
chr2 (407-488)||(1037273-1037354)
chr2 (24-206)||(45244994-45245178)
[»] chr1 (6 HSPs)
chr1 (30-267)||(19468350-19468586)
chr1 (146-267)||(9581198-9581319)
chr1 (146-267)||(9586766-9586887)
chr1 (143-256)||(7554546-7554659)
chr1 (439-567)||(19468038-19468166)
chr1 (408-516)||(33160914-33161022)
[»] chr5 (5 HSPs)
chr5 (29-263)||(41901390-41901623)
chr5 (29-267)||(41889402-41889642)
chr5 (71-243)||(32267530-32267699)
chr5 (121-192)||(28525116-28525187)
chr5 (377-488)||(28532084-28532195)
[»] chr7 (5 HSPs)
chr7 (71-265)||(10614648-10614839)
chr7 (141-202)||(7977703-7977764)
chr7 (130-267)||(10169981-10170115)
chr7 (130-267)||(10177506-10177640)
chr7 (143-195)||(15092071-15092123)
[»] scaffold0295 (1 HSPs)
scaffold0295 (71-245)||(494-668)
[»] scaffold0807 (1 HSPs)
scaffold0807 (141-191)||(1388-1438)
[»] scaffold0262 (1 HSPs)
scaffold0262 (407-488)||(326-407)
[»] scaffold0105 (1 HSPs)
scaffold0105 (71-202)||(496-627)
[»] scaffold0014 (2 HSPs)
scaffold0014 (133-198)||(88933-88998)
scaffold0014 (377-436)||(89137-89196)


Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 38 - 584
Target Start/End: Original strand, 1600439 - 1600987
Alignment:
Q  38 atttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaac 135  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600439 attttatagagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaac 1600538  T
Q  136 actgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttg 235  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600539 actgggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttg 1600638  T
Q  236 aaaattgggaaaattggaagcaaacattatgacctttgtatcttgtaacacataattgttagccaaacgtagacacttgatttgagggtttacaacacaa 335  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600639 caaattgggaaaattggaagcaaacattatgatctttgtatcttgtaacacataattgttagccaaacgtagacacttgatttgagggtttacaacacaa 1600738  T
Q  336 ttccctactctttcatatgcaatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagca 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600739 ttccctactctttcatatgcaatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagca 1600838  T
Q  436 tactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaa 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1600839 tactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaa 1600938  T
Q  536 atgttggatacgttgacacttggataacaaactaactactccagtataa 584  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1600939 atgttggatacgttgacacttggataacaaactaactactccaatataa 1600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 55908772 - 55908576
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||| |||||||| | || | |||||| |||||| ||||   | || |||| | ||||||| |  ||||| ||||||||||||| |||| |||||    
T  55908772 tgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacat 55908673  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    ||||||| ||||| |||||||||||||||||||||||||  |||   |||||||||||| | ||| |||||||| ||| |||||||||||| |||||    
T  55908672 ctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatga 55908576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 8184118 - 8183901
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||| |||||||||||  ||| ||||| ||| ||||  |||||||||||||||| |||||  ||||||||||||||||||  | |||| |||    
T  8184118 ctctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattctgctcagcctca 8184019  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatc 226  Q
    || ||| |   | |||||||||||||| |||||||| | |||| |||||||||| ||||  |||||||| |||||| |||| || ||||   ||||||||    
T  8184018 tttttggaatgtaagctaagttcaaatctctaatctcacaacaactccttaaaatttgagtaatacctttttcagaaatgtcaaagcaatgactcaaatc 8183919  T
Q  227 aagcagttgaaaattggg 244  Q
    |||| | || ||||||||    
T  8183918 aagccgctgcaaattggg 8183901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 67 - 258
Target Start/End: Complemental strand, 12121505 - 12121314
Alignment:
Q  67 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaaca-ctgagctaagttcaaatgtctaatcttag 165  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||  ||||||||| ||  | |||| ||| | ||||||||||||  ||||||  |    
T  12121505 tatatgacaagttcaacacttctagtttgggaacttcaaagttcattcggcgcagcttccttcctaaacaactg-gttaagttcaaatgcgtaatctcgg 12121407  T
Q  166 aacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaa 258  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||  ||||   ||||||||||||| ||| |||||||| |||  ||||||||    
T  12121406 aacatgtccttaagacttggaaaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacggaagcaa 12121314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 570402 - 570524
Alignment:
Q  67 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttaga 166  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||| | |||| || ||||||||||||||||| ||||  ||| |    
T  570402 tatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagtttaca 570501  T
Q  167 acatctccttaaaacttgacaaatac 192  Q
    ||||   |||||||||||||||||||    
T  570502 acat---cttaaaacttgacaaatac 570524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 53761817 - 53761692
Alignment:
Q  70 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 169  Q
    |||||||||||||| |||| || ||  ||||| |||||||||||||    ||||||| | |||||||||  |||||||||||||| ||||| ||| ||||    
T  53761817 atgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaaca 53761718  T
Q  170 tctccttaaaacttgacaaatacctt 195  Q
    ||||||||||||||||||||||||||    
T  53761717 tctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 263
Target Start/End: Original strand, 546968 - 547160
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    || |||| || | |||| |  | |||||||||||| || |||||| |||||    
T  546968 tgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggataagttcaaatgccttatcttacaacat 547067  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacatt 263  Q
    ||||||||||| | ||||||||  |||||||||||||||   |||   || |||||||||||||| |||||||| ||  |||||| |||||||    
T  547068 ctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattggggaacatggaaggaaacatt 547160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 1548512 - 1548297
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctc-gcagcttc 125  Q
    |||||||||||  ||| ||||| |||||| ||||  ||| ||||  ||||||||||||||||||||||  ||| ||||||||||| |||   | ||||||    
T  1548512 ctctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttc 1548413  T
Q  126 attattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaat 225  Q
    | | || |||   ||||||||||||| |||||||||||| |||||||   |||||||| |||||||||||| || ||||||  | ||||| |  ||||||    
T  1548412 acttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaat 1548316  T
Q  226 caagcagttgaaaattggg 244  Q
    |||||||||| ||||||||    
T  1548315 caagcagttgcaaattggg 1548297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 7225927 - 7225766
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||||||||| ||||||| ||  |||||||||||||||||    || ||||||| | ||| ||| |  | |||||||||||||||||||||| |||||    
T  7225927 tgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacat 7225828  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcag 232  Q
    |||| ||||||||||||||  ||||||||| | ||||||  | ||  |||||||||||||||    
T  7225827 ctccgtaaaacttgacaaaccccttcttcatacatgttatgggaagagctcaaatcaagcag 7225766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 55908418 - 55908337
Alignment:
Q  407 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 488  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  55908418 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 55908337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 553508 - 553667
Alignment:
Q  47 agtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagcta 144  Q
    ||||||||||| ||||| ||| ||  |||||||||||||||||||||||| ||||||| |||||||| |   || | ||||| | |||||||  | | ||    
T  553508 agtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggtta 553607  T
Q  145 agttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagata 204  Q
    |||||||||||||||| ||| ||||| |||||||||| |||  || | ||||||||||||    
T  553608 agttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagata 553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 659764 - 659895
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||||||||||||||| |||||  |||||||||| || ||| |||| ||||||  | |||||||    |||||||| |||| |||||| ||| |||||    
T  659764 tgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgttacaacat 659863  T
Q  171 ctccttaaaacttgacaaataccttcttcaga 202  Q
    |||||||||| ||||| |||| ||||||||||    
T  659864 ctccttaaaatttgaccaatatcttcttcaga 659895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 3438541 - 3438474
Alignment:
Q  140 agctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  || |||||| ||||||||||    
T  3438541 agctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgt 3438474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 8187179 - 8186962
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||| ||| |||| |||| || ||| ||||| ||| ||||  ||||||||||||||||||||||   || |||||||||||||||    |||   |    
T  8187179 ctctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaa 8187080  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatc 226  Q
     | ||| ||| |  |||||||||||||  ||||||| | |||||||| | ||||||||||||||||||||||||||||||| |  ||||   ||||||||    
T  8187079 ctcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatc 8186980  T
Q  227 aagcagttgaaaattggg 244  Q
    |||||  || ||||||||    
T  8186979 aagcaactgcaaattggg 8186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 1533963 - 1533898
Alignment:
Q  142 ctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 207  Q
    |||||||||||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatgt 1533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 1524560 - 1524397
Alignment:
Q  43 atagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactga 140  Q
    |||||||| |||||| ||||| ||| ||  |||||| |||||||||||||  ||  |||||||||||||||||||  | || |  ||| | ||||| |      
T  1524560 atagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattccatgaagttctattttagaacagttg 1524461  T
Q  141 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagata 204  Q
    |||||||||||||| ||||  ||| |||||||||||||||| |||  |||||||||||||||||    
T  1524460 gctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagata 1524397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 1489409 - 1489267
Alignment:
Q  67 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttaga 166  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||| | ||||||| ||  | || |      |||||||||||| ||||| | |||    
T  1489409 tatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgcacagcttctttcctaaagatcttcttaagttcaaatgcctaatatcaga 1489310  T
Q  167 acatctccttaaaacttgacaaataccttcttcagatatgtta 209  Q
    |||| || ||||||| ||  |||||||||||||||||||||||    
T  1489309 acatgtctttaaaacatggaaaataccttcttcagatatgtta 1489267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 1495895 - 1495830
Alignment:
Q  142 ctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 207  Q
    |||||| ||||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  1495895 ctaagtccaaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcagatatgt 1495830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 644884 - 645043
Alignment:
Q  70 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 169  Q
    |||||||||  ||||||||||||||  ||||||||||||||| |    | ||||||| | |||||||  ||| ||| |||||||||||||| ||| ||||    
T  644884 atgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaca 644983  T
Q  170 tctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 229  Q
    | || ||||||| |||   |||||||||||||||| ||   |||||  ||||||||||||    
T  644984 tatcattaaaacatgaaccataccttcttcagatacgtctttgcaatggctcaaatcaag 645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 1519227 - 1519062
Alignment:
Q  32 tttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcatta 129  Q
    ||||||||  ||||||||||||  || ||||||||| ||||  |||||||||||||||| |||||  |||||||||||||||||| | |||||| |  |     
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattcat-gcagctcctctc 1519129  T
Q  130 ttgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 196  Q
    || |  |    ||| |||||||||| |||||| |  ||||||| |||||||||||||||||||||||    
T  1519128 ttaattaaaatgctcagttcaaatgcctaatccttcaacatcttcttaaaacttgacaaataccttc 1519062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 265
Target Start/End: Original strand, 532240 - 532432
Alignment:
Q  67 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttaga 166  Q
    |||||||||||||||||||||| || ||  | |||||||||||||||||  | || |||| | ||||| |    | ||||||||||| ||| ||||||      
T  532240 tatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcactcttgaagag---gttaagttcaaatctctgatctta-- 532334  T
Q  167 acatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattat 265  Q
     |||||| | ||||||||| |||||||||||| ||||||||||   |||  |||||| || ||||  || |||||||| ||| |||| |||||||||||    
T  532335 -catctcttcaaaacttgataaataccttctttagatatgttataacaatagctcaagtccagcatatgtaaattggggaaaatggatgcaaacattat 532432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 1537739 - 1537677
Alignment:
Q  143 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatat 205  Q
    |||||||||||| |||| ||  |||||| |||||||||||||| |||||||||||||||||||    
T  1537739 taagttcaaatgcctaagctcggaacatgtccttaaaacttgaaaaataccttcttcagatat 1537677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 406 - 564
Target Start/End: Complemental strand, 3438343 - 3438186
Alignment:
Q  406 tgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatc 505  Q
    |||||| ||| |||||| ||| |||||||||   ||| ||||||||||||||||| |||||||||||| |||||   | ||||  | |||||||||||||    
T  3438343 tgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaatcaccatgaaacatggacaacttgacaacatggcgatc 3438244  T
Q  506 tttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataaca 564  Q
     || | ||| |  | | ||| |||| |||||||||| |||| |||||||||||||||||    
T  3438243 atttagaaagtaag-tttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 558630 - 558687
Alignment:
Q  148 tcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatat 205  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||||    
T  558630 tcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctttttctgatat 558687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 6006455 - 6006519
Alignment:
Q  143 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 207  Q
    ||||||||||||||||||||||  |||| ||||||||||||||  || |||||| ||||||||||    
T  6006455 taagttcaaatgtctaatcttactacatttccttaaaacttgagcaacaccttcatcagatatgt 6006519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 1552738 - 1552676
Alignment:
Q  141 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatg 206  Q
    |||||||||||||||||||||||| |||||   |||||||||| |||||||||||| || ||||||    
T  1552738 gctaagttcaaatgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatg 1552676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 1537815 - 1537757
Alignment:
Q  67 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttc 125  Q
    ||||||||||||||||||| || |||||  |||||||||||||||||||  ||||||||    
T  1537815 tatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 1517471 - 1517407
Alignment:
Q  143 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 207  Q
    ||||| ||||||| | |||||| |||||||||||||||| |||   |||||||||||||||||||    
T  1517471 taagtccaaatgtgtcatcttacaacatctccttaaaacatgatcgataccttcttcagatatgt 1517407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 1545830 - 1545870
Alignment:
Q  73 acaagttcaacacctccagtttaagaacttcaaagttcatt 113  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  1545830 acaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 12120136 - 12120052
Alignment:
Q  121 gcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatat 205  Q
    |||||| | ||||||| || || |||||||||||||||||||||  || | || |||||||||||| ||||||||| | ||||||    
T  12120136 gcttcagtcttgaacagtgggcaaagttcaaatgtctaatcttactacttttctttaaaacttgaccaataccttcgttagatat 12120052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 641040 - 641095
Alignment:
Q  141 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 196  Q
    |||||||||||||||||||  ||| ||||| |||||||||||||| |||| |||||    
T  641040 gctaagttcaaatgtctaacattacaacatatccttaaaacttgaaaaattccttc 641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 1513493 - 1513407
Alignment:
Q  31 ctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaagttcattcc 115  Q
    |||||||||| | ||||||| |||||| |||||  || ||  ||||||||||||||| || |||||  |||||||||||||||||||    
T  1513493 ctttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 370983 - 371113
Alignment:
Q  79 tcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaa 178  Q
    |||||||||| ||||| ||||||  || |||||| ||   || ||||| | |||| || || |||||||||||||| ||||||||||| |||||  ||||    
T  370983 tcaacacctcaagtttgagaactctaatgttcataccatacaacttcactcttgagcagtgggctaagttcaaatgcctaatcttagaccatctatttaa 371082  T
Q  179 aacttgacaaataccttcttcagatatgtta 209  Q
    |||| |||| ||||  |  ||||||||||||    
T  371083 aactcgacagatactgttgtcagatatgtta 371113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 21834350 - 21834296
Alignment:
Q  143 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttct 197  Q
    ||||||||||||  |||||||| ||||| ||||||||||||  ||||||||||||    
T  21834350 taagttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttct 21834296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 1505062 - 1505017
Alignment:
Q  164 agaacatctccttaaaacttgacaaataccttcttcagatatgtta 209  Q
    ||||||| |||||||||| ||  |||||||||||||||||||||||    
T  1505062 agaacatgtccttaaaacatggaaaataccttcttcagatatgtta 1505017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 1527893 - 1527812
Alignment:
Q  407 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 488  Q
    |||||||||||||||| | | ||||||  ||  ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||    
T  1527893 gagtgcaaacaaggctaaatgtgtgaggctatcacatttactaatgtttatagacaacaaatcactaagaaacgaagacaac 1527812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 641321 - 641373
Alignment:
Q  408 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttataga 460  Q
    ||||||||||||| ||||| ||||||| ||| ||| | |||||||||||||||    
T  641321 agtgcaaacaaggttgattttgtgagcttaccacaatgactaaggtttataga 641373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 18315366 - 18315133
Alignment:
Q  24 gacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcag 121  Q
    |||| |||||||||||  |||||||||||||||| |||||  || ||||  ||||||||||||||||||||||  |||||| |||||||||||| || ||    
T  18315366 gacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtag 18315267  T
Q  122 cttcattattgaa-cactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgct 220  Q
    ||||||| ||||| ||| ||||||||||||| |||||||||| |||||| || | |||||||||||||||||||||||||| |||||||  |||   |||    
T  18315266 cttcattcttgaatcac-gagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagct 18315168  T
Q  221 caaatcaagcagttgaaaattgggaaaattggaag 255  Q
    |||||||||||  || |||||||| ||| ||||||    
T  18315167 caaatcaagcaactgcaaattggggaaaatggaag 18315133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 32151312 - 32151545
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||  ||||||||| |||||| |||| |||| ||  ||||||||| ||||||||||| ||   |||||| ||||||||||| ||||||||||    
T  32151312 ctctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagcttca 32151411  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatc 226  Q
        | ||||    |  || |||||||| ||||||| ||| |||||   ||||||||||||||| ||||||||||||||||||  |||||  ||||||||    
T  32151412 catgtaaacagccggtgaaattcaaatgcctaatctcagagcatct---taaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatc 32151508  T
Q  227 aagcagttgaaaattgggaaaattggaagcaaacatt 263  Q
    ||||||||| ||||| || ||| ||||||||||||||    
T  32151509 aagcagttgcaaattagggaaaatggaagcaaacatt 32151545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 17636494 - 17636268
Alignment:
Q  24 gacacctctttgagatttcatagagtgcttcatcgtcaac-cct-tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcc-tcgc- 119  Q
    |||| |||||||||||  |||| | ||||||||||||||| ||| | | |||||||||||||||||||| |||  ||||||||||||||||||  |||      
T  17636494 gacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgat 17636395  T
Q  120 --agcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaact 217  Q
      || |||| | |||||||  |  ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||  || ||||| ||| |||||      
T  17636394 gtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatc 17636295  T
Q  218 gctcaaatcaagcagttgaaaattggg 244  Q
     |  ||||||||||| || ||||||||    
T  17636294 tcgtaaatcaagcagctgcaaattggg 17636268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 34936256 - 34936031
Alignment:
Q  24 gacacctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcag 121  Q
    |||| ||||||| |||  ||||||||| || ||| ||||| |||  ||||||||||| ||||||||| |||||  |||| |||||| ||||||   | ||    
T  34936256 gacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaag 34936157  T
Q  122 cttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctc 221  Q
     |||| | ||||||| |  || |||| |||||||||||| | | |||||||||||||||| ||| |||||||||  | |||||||  | |||||  ||||    
T  34936156 gttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgattagatatgccactgcaatcgctc 34936057  T
Q  222 aaatcaagcagttgaaaattgggaaa 247  Q
    ||||||||||| || |||||||||||    
T  34936056 aaatcaagcagatgcaaattgggaaa 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 21235609 - 21235701
Alignment:
Q  67 tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaa 159  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||| | ||| |||| | |||| || ||||||||||||||||| ||||    
T  21235609 tatatgacaagttcaacacctccagtttgggaacttcaaagttcactccacacagtttcacttttgagcagtgagctaagttcaaatgcctaa 21235701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 28246340 - 28246206
Alignment:
Q  70 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 169  Q
    ||||||||| |||||||||||||||  ||||||||||||||| |    | ||||||| | |||||||  ||| ||| |||||||||||||| ||| ||||    
T  28246340 atgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaaca 28246241  T
Q  170 tctccttaaaacttgacaaataccttcttcagata 204  Q
    | || ||||||| |||  |||||||||||||||||    
T  28246240 tatcattaaaacatgaacaataccttcttcagata 28246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 27922519 - 27922674
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||   ||| ||||||||||| |||||  ||  ||||||||||||||||||||||| |||  ||||||||||||||||| ||   || ||||    
T  27922519 ctctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatttct---agtttca 27922615  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttga 185  Q
      ||||||||||  | |||||||||||||||||| ||| | ||| ||| ||||||||||    
T  27922616 ccattgaacacttggataagttcaaatgtctaatgttacagcatatccctaaaacttga 27922674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 44736578 - 44736668
Alignment:
Q  117 cgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgt 207  Q
    |||||||||||| ||||||| |    |||||| |||||| | || ||||||||| |||||||||| ||| |||||||||||||| ||||||    
T  44736578 cgcagcttcattcttgaacagttgtttaagttaaaatgtgttatgttagaacatgtccttaaaacatgagaaataccttcttcaaatatgt 44736668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 488
Target Start/End: Complemental strand, 17627778 - 17627668
Alignment:
Q  378 atctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 477  Q
    |||||||||||| ||||||| ||   |  ||||| |||||||||||||||   |||||| | ||| | ||||||||||| ||| ||||||| ||||||||    
T  17627778 atctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaattaccaagaa 17627679  T
Q  478 acgaagtcaac 488  Q
    | |||| ||||    
T  17627678 atgaagacaac 17627668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 17627952 - 17627911
Alignment:
Q  222 aaatcaagcagttgaaaattgggaaaattggaagcaaacatt 263  Q
    |||||||||||||| |||||||| ||| ||||||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacatt 17627911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 7119212 - 7119382
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| |   ||||  |||||||||||||  | ||||||| | ||||||| || ||||||||||||||| ||||||||||||||    
T  7119212 tgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacat 7119311  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 244  Q
    ||||||||||||||||||||||   |||||||||||||| ||||| |  |||||||||| ||||| ||||||||    
T  7119312 ctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggg 7119382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 7131690 - 7131860
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| |   ||||  |||||||||||||  | ||||||| | ||||||| || ||||||||||||||| ||||||||||||||    
T  7131690 tgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacat 7131789  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggg 244  Q
    ||||||||||||||||||||||   |||||||||||||| ||||| |  |||||||||| ||||| ||||||||    
T  7131790 ctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggg 7131860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 6402872 - 6403040
Alignment:
Q  30 tctttgagatttcatagagtgcttcatcgtcaaccct--tatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcat 127  Q
    ||||||||||  ||||||||| |||||| |||||| |  ||| ||||||||||||||| || ||||   ||||| ||||||| |||||  | |||||||     
T  6402872 tctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcac 6402971  T
Q  128 tattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 196  Q
    | ||||||||  || |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  6402972 tcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 407 - 477
Target Start/End: Complemental strand, 7993875 - 7993805
Alignment:
Q  407 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 477  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  7993875 gagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaa 7993805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 11936363 - 11936186
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||   |||||||| || ||||||||| ||| ||  |||||||| |||||||||||||||  ||||||||||||||| |   || |||||||    
T  11936363 ctctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttca 11936264  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagata 204  Q
     | |||||||  ||| ||| |||||||||||||| ||| ||||| || ||||||| |||  |||||||||||||||||    
T  11936263 gtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagata 11936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 11948343 - 11948166
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttata--tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||   |||||||| || ||||||||| ||| ||  |||||||| |||||||||||||||  ||||||||||||||| |   || |||||||    
T  11948343 ctctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttca 11948244  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagata 204  Q
     | |||||||  ||| ||| |||||||||||||| ||| ||||| || ||||||| |||  |||||||||||||||||    
T  11948243 gtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagata 11948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 6432216 - 6432341
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||| ||| ||  |||||||||||||||||||  | ||||||| | ||  ||| |  ||||||||||||||| |||  ||| |||||    
T  6432216 tgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacat 6432315  T
Q  171 ctccttaaaacttgacaaataccttc 196  Q
    ||||||||||||||||||||||||||    
T  6432316 ctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 6594650 - 6594525
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||||| |||||||||||||||  |||||  |||||| |||||  | ||||||| | ||||||||   | ||||| ||||||| |||||||| |||||    
T  6594650 tgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacat 6594551  T
Q  171 ctccttaaaacttgacaaataccttc 196  Q
    ||||||||||||||||||||||||||    
T  6594550 ctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 6394919 - 6395112
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| |   ||||| |||||||||||||  | || |||| | |||||||   |||||||||||||||| ||| |||| |||||    
T  6394919 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacat 6395018  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
     || ||||||||||||||||||   |||||||||| |    |||||   |||||||||| || || |||||||| ||| |||||| |||||||||||    
T  6395019 ttctttaaaacttgacaaatac---cttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatga 6395112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 140 - 260
Target Start/End: Original strand, 9411476 - 9411596
Alignment:
Q  140 agctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaa 239  Q
    ||||| ||||||||||||||| |||  ||||||||||||||| ||  |||||||||| | ||||||||||   || | ||||||||||||||| || |||    
T  9411476 agctaggttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaa 9411575  T
Q  240 ttgggaaaattggaagcaaac 260  Q
    ||||| ||| |||||||||||    
T  9411576 ttggggaaaatggaagcaaac 9411596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 6416021 - 6416214
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| ||  ||||| |||||| ||||||  | ||||||| | ||  |||    |||||||||||||| | ||||||| |||||    
T  6416021 tgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacat 6416120  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
     || ||||||||||||||||||   ||||||||| |  | | ||||   ||||||||||||| || |||||||| || ||||||| |||||||||||    
T  6416121 atctttaaaacttgacaaatac---cttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatga 6416214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 6426566 - 6426759
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||| |||||||||||||| |   ||||| |||||||||||||  | || ||||   |||||||   |||||||||||||||| ||| |||| |||||    
T  6426566 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacat 6426665  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
     |||||||||||| ||||||||   |||||||||| | |  ||||    |||||||||| || || |||||||| ||| |||||||| |||||||||    
T  6426666 ttccttaaaacttcacaaatac---cttcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatga 6426759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 6585325 - 6585156
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||  ||||||||| |||||| |||||| || |||  ||||||||||| |||||||  |    ||||  |||||| |||||  | |||||||    
T  6585325 ctctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttca 6585226  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 196  Q
     | ||||||||  ||  ||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||    
T  6585225 ctcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 7994226 - 7994101
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||| |||||||||||| || ||  ||||| |||||||||||||| | ||||||| | ||| ||| |  |||| ||||||||| || |||||| |||||    
T  7994226 tgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacat 7994127  T
Q  171 ctccttaaaacttgacaaataccttc 196  Q
     |||||||||| | ||||||||||||    
T  7994126 ttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 8913955 - 8913904
Alignment:
Q  144 aagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacctt 195  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  8913955 aagttcaaatgtttaatcttacaacatcttcttaaaacttgacaaatacctt 8913904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 6589055 - 6588949
Alignment:
Q  377 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 476  Q
    |||||||  ||||||||||||||||  |   ||||||||||| ||||||||||||| | |||| || | |||||||||||  || |||||||||||||||    
T  6589055 gatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaatcaccaaga 6588956  T
Q  477 aacgaag 483  Q
    || ||||    
T  6588955 aaggaag 6588949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 6589367 - 6589174
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||||||||||||||||||  |  ||||| |||||||||||||  | ||||||| | |   |||    |||||||||||||| ||||||||| |||||    
T  6589367 tgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatcttacaacat 6589268  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    || || || |||||||||||||   ||| |||||||||| | |||    | ||||||||||  |  |||||||| ||| ||||||||||||||||||    
T  6589267 cttctcaatacttgacaaatac---ctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatga 6589174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 6410061 - 6410248
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||| |||||||||||| ||| ||  |||||||||||||||||||  | ||||||| | ||   || |  ||||||| ||||||  ||| |||| |||||    
T  6410061 tgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaataggctaagtccaaatgcttaagcttacaacat 6410160  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaaca 261  Q
     ||  |||||||||||||||||||||   |||||| |    |||||   |||||||||| ||||| |||||||||||| ||||||||||||    
T  6410161 ttctgtaaaacttgacaaataccttc---agatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaagcaaaca 6410248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 6596633 - 6596567
Alignment:
Q  413 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 479  Q
    ||||| |||||||||||||||| |   ||| | | ||||||||||||||||||||||||||||||||    
T  6596633 aaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaac 6596567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 14820819 - 14820873
Alignment:
Q  142 ctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 196  Q
    |||||||||||||| ||| |||| ||||| |||||||| ||||||||||||||||    
T  14820819 ctaagttcaaatgtttaagcttacaacatttccttaaaccttgacaaataccttc 14820873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 6596972 - 6596847
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| |   ||| ||||||||| ||| |  |  ||||||   ||||||| |  ||| ||||||||||  ||||||||  ||||    
T  6596972 tgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcacacttgaacattcggctcagttcaaatgcttaatcttatcacat 6596873  T
Q  171 ctccttaaaacttgacaaataccttc 196  Q
    ||||| ||||||||||||||||||||    
T  6596872 ctcctgaaaacttgacaaataccttc 6596847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttca 111  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 6423228 - 6423394
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||  ||||||||| || ||||  ||| ||| |||  |||||||||||||||||||| ||  |||||| |||||||||| | || |||||||    
T  6423228 ctctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttca 6423327  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacc 193  Q
     |  |  ||| |  ||||||||||||||| ||| || |  |||| ||| |||||| |||||||||||    
T  6423328 cttgttcacaataggctaagttcaaatgtttaagctcacgacatttccgtaaaacatgacaaatacc 6423394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 566
Target Start/End: Complemental strand, 8913723 - 8913599
Alignment:
Q  446 actaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaa----aaatcggctcttttaagaaccaaatgttg 541  Q
    ||||||||||||||| ||||||| |||||||||| ||| ||||  | |||||||  |||| |||| |    ||||  |  || |||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  542 gatacgttgacacttggataacaaa 566  Q
     | || |||||||||||||||||||    
T  8913623 taaacattgacacttggataacaaa 8913599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 9411367 - 9411450
Alignment:
Q  30 tctttgagatttcatagagtgcttcatcgtcaac-cct-tatatgacaagttcaacacctccagtttaagaacttcaaagttca 111  Q
    |||||||||| |||||||||  |||||||  ||| ||| ||||||||||||||||||||||||| ||  |||| ||||||||||    
T  9411367 tctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttca 9411450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 479
Target Start/End: Original strand, 6432557 - 6432629
Alignment:
Q  407 gagtgcaaacaaggctgattctgtgagcata-ctacattcactaaggtttatagaaaccaaatcaccaagaaac 479  Q
    ||||| ||||| ||||||||||||||| ||| | ||| | ||||||||||||||| ||||||||| ||||||||    
T  6432557 gagtgaaaacagggctgattctgtgag-atatcgacaattactaaggtttatagacaccaaatcagcaagaaac 6432629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 13470776 - 13470583
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| ||  ||||  |||||||||||||  | ||||||| | ||  ||| |  |||||||||||||| ||||||||| |||||    
T  13470776 tgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacat 13470677  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
     |||||||||||||||||||||||| |   |||| |  | ||||||   ||||||||||||| || |||||||| ||||||||||||||||||||||    
T  13470676 atccttaaaacttgacaaatacctttt---gataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatga 13470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 51113869 - 51113700
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    ||||| |||||  ||||||||| |||||| |||||| || |||  |||||||  ||||||||||||||  || ||||||||||||||||  | |||||||    
T  51113869 ctcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttca 51113770  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttc 196  Q
     | ||||||| | |||||| |||||||| ||||| ||| |||||||| ||||||||||||||||||||||    
T  51113769 gttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc 51113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 51764485 - 51764291
Alignment:
Q  70 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 169  Q
    |||||||||  ||||||||||| ||  ||||| |||||||||||||  | ||||||| | ||||||| |  | || ||||||||| ||||||||||||||    
T  51764485 atgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaaca 51764386  T
Q  170 tctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    |||||||||||||| ||| | ||   ||| |||||||  | |||||    | ||||||||||| || |||||||| ||| ||||||||||||||||||    
T  51764385 tctccttaaaacttcacagacac---ctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatga 51764291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 51120986 - 51120827
Alignment:
Q  24 gacacctctttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcag 121  Q
    |||| |||||||||||| |||| |||  |||||| ||||| ||| ||||  |||||||||||||||||| ||| ||||||||||||||||||||  ||||    
T  51120986 gacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcag 51120887  T
Q  122 cttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaac 181  Q
     |||| | |||||||    |  |||||||| |||||||| ||| ||||||||| ||||||    
T  51120886 tttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaac 51120827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 514764 - 514578
Alignment:
Q  79 tcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaa 178  Q
    |||||||||| ||||| ||||||  || |||||| ||   || ||||| | |||| || || |||||||||||||| ||||||||||| |||||| ||||    
T  514764 tcaacacctcaagtttgagaactctaatgttcataccgtacaacttcactcttgagcagtgggctaagttcaaatgcctaatcttagaccatctctttaa 514665  T
Q  179 aacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaatt-gggaaaattggaagcaaacattat 265  Q
    ||||||||| |||| ||  ||||||||||||   |||  |||||||||||  || || ||||| ||||||||| ||||||||||||||    
T  514664 aacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctgcaaattcgggaaaatt-gaagcaaacattat 514578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 1657305 - 1657460
Alignment:
Q  70 atgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaaca 169  Q
    ||||||||| |||||||||||||||  ||||||||||||||| |   || ||||||| | ||    |  ||| ||| |||||||||||||| ||| ||||    
T  1657305 atgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaaca 1657400  T
Q  170 tctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 229  Q
    | || ||||||| |||  ||||||||||||||||||||   |||||  ||||||||||||    
T  1657401 tatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaag 1657460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 141 - 267
Target Start/End: Complemental strand, 1037638 - 1037512
Alignment:
Q  141 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaat 240  Q
    ||||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||  |||   |||||||||||| | ||| ||||    
T  1037638 gctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaat 1037539  T
Q  241 tgggaaaattggaagcaaacattatga 267  Q
    |||| ||| |||||||||||| |||||    
T  1037538 tggggaaaatggaagcaaacaatatga 1037512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 33 - 262
Target Start/End: Complemental strand, 32785856 - 32785628
Alignment:
Q  33 ttgagatttcatagagtgcttcatcgtcaacccttatatg--acaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattat 130  Q
    |||||||  |||| ||||||||||| ||||  ||| ||||  |||||||||||||||| |||||  || ||| |||||||||||  ||  |||  ||| |    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattct 32785757  T
Q  131 tgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagc 230  Q
    |||| | ||  | || ||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||  ||||  ||||||||||||     
T  32785756 tgaaaagtggtccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagt 32785660  T
Q  231 agttgaaaattgggaaaattggaagcaaacat 262  Q
    ||||| ||||||| |||| | |||| ||||||    
T  32785659 agttgcaaattggaaaaaatagaagaaaacat 32785628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 1037354 - 1037273
Alignment:
Q  407 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 488  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1037354 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 1037273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 45245178 - 45244994
Alignment:
Q  24 gacacctctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcag 121  Q
    |||| |||||||||||  ||| ||||| |||||| |||||| || | |  ||||| ||||||||||| |||||  ||||||||||||| ||||| || |     
T  45245178 gacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccacgtaa 45245079  T
Q  122 cttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatg 206  Q
     | || | |||||||   | ||||||| ||||| ||||| ||| |||||||||||||||| ||||| || |||||| ||| ||||    
T  45245078 ttccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaacatgacacattccttctccagttatg 45244994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 19468586 - 19468350
Alignment:
Q  30 tctttgagatttcatagagtgcttcatcgtcaacccttatat--gacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcat 127  Q
    ||||||||||  |||| |||| |||||| |||||| || |||  ||||| |||||||||||||| ||  ||||| ||||||||| |||  | || ||||     
T  19468586 tctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcac 19468487  T
Q  128 tattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatca 227  Q
    | ||||||| || |||||||| ||||| ||||| |||||||| |||||||||||||||||||| |   |||| |||||||   ||||   | ||||||||    
T  19468486 tcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttgacaaatgc---cttccgatatgtggttgcatgagttcaaatca 19468390  T
Q  228 agcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    ||||| || |||||||||||| ||||||||||||||||||    
T  19468389 agcagctgcaaattgggaaaaatggaagcaaacattatga 19468350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 9581198 - 9581319
Alignment:
Q  146 gttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggga 245  Q
    ||||||||||||||||| | |||||||  ||||||||||||||||||||  || ||||||||||  ||||  || || ||||||||| || ||||||||     
T  9581198 gttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgggg 9581297  T
Q  246 aaattggaagcaaacattatga 267  Q
    ||| | ||||||||||||||||    
T  9581298 aaaattgaagcaaacattatga 9581319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 9586766 - 9586887
Alignment:
Q  146 gttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggga 245  Q
    ||||||||||||||||| | |||||||   |||||||||||||||||||  || ||||||||||  ||||  || || ||||||||| || ||||||||     
T  9586766 gttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgggg 9586865  T
Q  246 aaattggaagcaaacattatga 267  Q
    ||| | ||||||||||||||||    
T  9586866 aaaattgaagcaaacattatga 9586887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 7554546 - 7554659
Alignment:
Q  143 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattg 242  Q
    |||||||||||||||||| |||  |||||| |||||||  ||| |||||||||||| |||||||| |  |||| |  ||||||||||||| |  ||||||    
T  7554546 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 7554645  T
Q  243 ggaaaattggaagc 256  Q
    |||||  |||||||    
T  7554646 ggaaagatggaagc 7554659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 567
Target Start/End: Complemental strand, 19468166 - 19468038
Alignment:
Q  439 tacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatg 538  Q
    |||||||||||||||||||||| || ||||||||||||||| ||| ||||    |||||| | |||| ||||||||  | || | || |||| |||||||    
T  19468166 tacattcactaaggtttatagacactaaatcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatg 19468067  T
Q  539 ttggatacgttgacacttggataacaaac 567  Q
    ||| | || |  |||||||||||||||||    
T  19468066 ttgcaaacctgcacacttggataacaaac 19468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 516
Target Start/End: Original strand, 33160914 - 33161022
Alignment:
Q  408 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctt 507  Q
    |||| |||||| ||||||||||||||| | | |||| || ||||||||||||| |||||| || |||||||| |||  |||  |||||||||  |||| |    
T  33160914 agtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcat 33161013  T
Q  508 tcaaaaaat 516  Q
    ||| |||||    
T  33161014 tcagaaaat 33161022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 41901623 - 41901390
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    |||||||||||   ||| ||||||||||| |||||  ||  |||||||||||||||||||||||||||  ||||||||||||  ||| ||   ||  |||    
T  41901623 ctctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagtctatttct---agtctca 41901527  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatc 226  Q
     ||| |||||||  | |||||||||||||||||| ||| ||||  ||||||||||||||  ||||||||||||| |||||  |   ||| ||||||||||    
T  41901526 ctatggaacacttggataagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatc 41901427  T
Q  227 aagcagttgaaaattgggaaaattggaagcaaacatt 263  Q
    |||||| || |||||||| ||| ||||||| ||||||    
T  41901426 aagcagctgcaaattggggaaaatggaagcgaacatt 41901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 267
Target Start/End: Complemental strand, 41889642 - 41889402
Alignment:
Q  29 ctctttgagatttcatagagtgcttcatcgtcaaccctt--atatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttca 126  Q
    ||||||||||| | ||| |||| |||||| |||||  ||  |||||| |||||||||||||||| |||  |||||| |||||||||| |  | |||||||    
T  41889642 ctctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttca 41889543  T
Q  127 ttattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatc 226  Q
     |||||||||    | ||||||||||| |||||| ||| ||||| ||||||||||||||  ||||||||| ||| |||||  |   ||| ||||||||||    
T  41889542 ctattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatc 41889443  T
Q  227 aagcagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    ||| || || ||||| || ||| ||||||||||||||||||    
T  41889442 aagtagctgcaaattagggaaaatggaagcaaacattatga 41889402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 32267530 - 32267699
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||||||||| ||||||| |||  ||||||||||||||||| ||   || |||| | |||||||||| | |||||||||||||||||| ||| |||||    
T  32267530 tgacaagttcaatacctccaatttgggaacttcaaagttcatttct---agtttcactgttgaacactgggataagttcaaatgtctaatgttacaacat 32267626  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgg 243  Q
     ||||||||| ||||   ||||||||||||||||||  |   ||| |||||||||||||||| || |||||||    
T  32267627 atccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 28525116 - 28525187
Alignment:
Q  121 gcttcattattgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatac 192  Q
    |||||||||||||||| |    ||| |||||||  || |||||| |||||||||||||||||||||||||||    
T  28525116 gcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatac 28525187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 488
Target Start/End: Original strand, 28532084 - 28532195
Alignment:
Q  377 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 476  Q
    |||||||  |||||||||||| |||  |  |||||||||||| | ||||||||| ||| ||  ||| | ||||||||| || || | |||||||||||||    
T  28532084 gatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaatcaccaaga 28532183  T
Q  477 aacgaagtcaac 488  Q
    ||||||| ||||    
T  28532184 aacgaagacaac 28532195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 71 - 265
Target Start/End: Original strand, 10614648 - 10614839
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||||||||||||||| ||  ||||  ||| |||||||||  | ||||||| | ||  ||| |  |||||||||||||| ||||||||| |||||    
T  10614648 tgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacat 10614747  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattgggaaaattggaagcaaacattat 265  Q
     |||||||||||||||||||||   ||||| ||| |  | ||||||   |||||||||||||||| |||||||| ||||||||||||||| ||||    
T  10614748 atccttaaaacttgacaaatac---cttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttat 10614839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 7977703 - 7977764
Alignment:
Q  141 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcaga 202  Q
    |||| ||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  7977703 gctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga 7977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 10170115 - 10169981
Alignment:
Q  130 ttgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 229  Q
    ||||||| || ||||| || ||||| ||||| |||||||| |||||||||||||||||||| |   |||| ||||||| | |||||  | |||||||||     
T  10170115 ttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgc---cttccgatatgtgattgcaagagttcaaatcaaa 10170019  T
Q  230 cagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    ||| |  ||||| |||||| |||||| |||||||||||    
T  10170018 cagcttcaaattaggaaaaatggaagaaaacattatga 10169981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 10177640 - 10177506
Alignment:
Q  130 ttgaacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 229  Q
    ||||||| || ||||| || ||||| ||||| |||||||| |||||||||||||||||||| |   |||| ||||||| | |||||  | |||||||||     
T  10177640 ttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgc---cttccgatatgtgattgcaagagttcaaatcaaa 10177544  T
Q  230 cagttgaaaattgggaaaattggaagcaaacattatga 267  Q
    ||| |  ||||| |||||| |||||| |||||||||||    
T  10177543 cagcttcaaattaggaaaaatggaagaaaacattatga 10177506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 15092123 - 15092071
Alignment:
Q  143 taagttcaaatgtctaatcttagaacatctccttaaaacttgacaaatacctt 195  Q
    ||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||    
T  15092123 taagttcaaatgtttaagcttataacatttccttaaaacttgagaaatacctt 15092071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 668 - 494
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    ||||||||| |||||||| | || | |||||| |||||| ||||   | || |||| | ||||||| |  ||||| ||||||||||||  |||| |||||    
T  668 tgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctagccttacaacat 569  T
Q  171 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgaaaattggga 245  Q
    ||||||| ||||| |||||||||||||||||||||||||  |||   |||||||||||| | ||| |||||||||    
T  568 ctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgtaaattggga 494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 1438 - 1388
Alignment:
Q  141 gctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaata 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1438 gctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 488
Target Start/End: Original strand, 326 - 407
Alignment:
Q  407 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 488  Q
    ||||||||||| || ||| | ||||||||| |||||||||||||| |||||||| |||||||| ||||||||| ||| ||||    
T  326 gagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaatcgccaagaaacaaagacaac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 496 - 627
Alignment:
Q  71 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgagctaagttcaaatgtctaatcttagaacat 170  Q
    |||||||||||||  ||||||||||  ||||||||||||||||   || ||| ||| | ||||| |||  ||||||||||| | |||||| | | |||||    
T  496 tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat 595  T
Q  171 ctccttaaaacttgacaaataccttcttcaga 202  Q
    || ||||||| ||| |||||| ||||||||||    
T  596 ctacttaaaatttgtcaaatatcttcttcaga 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 88933 - 88998
Alignment:
Q  133 aacactgagctaagttcaaatgtctaatcttagaacatctccttaaaacttgacaaataccttctt 198  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||  |||  |||||||||||    
T  88933 aacactcagttaagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttctt 88998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 89137 - 89196
Alignment:
Q  377 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcat 436  Q
    ||||||| | ||| ||||| | |||| ||||||||||||||||||||| |||||||||||    
T  89137 gatctcactgagtgaaggatagttctaattgagtgcaaacaaggctgagtctgtgagcat 89196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University