View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14123_low_6 (Length: 377)
Name: NF14123_low_6
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 113 - 360
Target Start/End: Complemental strand, 32541512 - 32541264
Alignment:
| Q |
113 |
tttgattaactcagttggattctgtgttgtactggcccagtttttgctt-cctatgttgcgttgtgtcaaatttcatccttttttctccctttctttatg |
211 |
Q |
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| T |
32541512 |
tttgattaacttagttggattctgtgttgtactggcccagtttttgctttcctatgttgcgttgtgtcaaatttcatccttttttctccctttctttatg |
32541413 |
T |
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| Q |
212 |
gctctcgttttcaannnnnnnncgtgcttgacttttgtgaaacatgcgggatctatgaactccacaagatggaattaaaactaagactatgaagtgcact |
311 |
Q |
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| T |
32541412 |
gctctcgttttcaattttttttcgtgcttgacttttgtgaaacatgcgagatctatgaactccacaagatggaattaaaactaagactatgaagtgcact |
32541313 |
T |
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| Q |
312 |
aacgcagacgccatacacacattgacatgtagacactgttttgattcat |
360 |
Q |
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| T |
32541312 |
aacgcagacgccatacacacattgacatgtagacactgttttgattcat |
32541264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 32541658 - 32541512
Alignment:
| Q |
18 |
actttttgtgttttgtttctttgtatattctcttttaaggtgttttgtggagatatttctgacttgttatatgactcagtaaagagaatatttcttttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32541658 |
actttttgtgttttgtttctttgtatattctcttttaaggtgttttgtggagatatttctgacttgttatatgactcagtaaagagaatatttcttttga |
32541559 |
T |
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| Q |
118 |
ttaactcagttggattctgtgttgtactggcccagtttttgcttcct |
164 |
Q |
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| T |
32541558 |
ttaactcagttggattctgtgttgtactggcccagtttctgcttcct |
32541512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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