View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14123_low_7 (Length: 292)
Name: NF14123_low_7
Description: NF14123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14123_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8725454 - 8725603
Alignment:
| Q |
1 |
cacataggtatactgggttatagatcgacccgtatgttggcccaatatgtaattttttagcccagtttagatttggcttgagaatgttcctccttttagt |
100 |
Q |
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| T |
8725454 |
cacataggtatactggattatagatcaacccgtatgttggcccaatgtgtaatttcagagcccagtt-agatttggcttgagaatgttcctctttttagt |
8725552 |
T |
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| Q |
101 |
gtaaatgaggtccattgggataaacatcaatatacgagtttatgttccttt |
151 |
Q |
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| T |
8725553 |
gtaaatgaggtccattgggataaacatcaatatacgagtttatgttccttt |
8725603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8684400 - 8684549
Alignment:
| Q |
1 |
cacataggtatactgggttatagatcgacccgtatgttggcccaatatgtaattttttagcccagtttagatttggcttgagaatgttcctccttttagt |
100 |
Q |
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| T |
8684400 |
cacataggtatactgggatatagatcgacccgtatgttggcccaacatgtaatttcagagcaca-attagatttggcttgaagacattcctccttttagt |
8684498 |
T |
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| Q |
101 |
gtaaatgaggtccattgggataaacatcaatatacgagtttatgttccttt |
151 |
Q |
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| T |
8684499 |
gtaaatgaggtccattgggataaacatcaatatatgacttgatgttccttt |
8684549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 23434246 - 23434115
Alignment:
| Q |
19 |
tatagatcgacccgtatgttggcccaatatgtaattttttagcccagtttagatttggcttgagaatgttcctccttttagtgtaaatgaggtccattgg |
118 |
Q |
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| T |
23434246 |
tatagatcgacccgtatgttggcccaaaatgtaatttcaaagcccaatt-agatttggcttgaagacattcctccttttagtgtaaatgaggtccattgg |
23434148 |
T |
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| Q |
119 |
gataaacatcaatatacgagtttatgttccttt |
151 |
Q |
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| T |
23434147 |
gataaccatcaatatatgacttgatattccttt |
23434115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 21232145 - 21232003
Alignment:
| Q |
8 |
gtatactgggttatagatcgacccgtatgttggcccaatatgtaattttttagcccagtttagatttggcttgagaatgttcctccttttagtgtaaatg |
107 |
Q |
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| T |
21232145 |
gtatactgggatatagatcgacccatatgttggcccaacaagtaatttcagatcccaatt-agttttggcttgaggacattcctccttttagtgtaaacg |
21232047 |
T |
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| Q |
108 |
aggtccattgggataaacatcaatatacgagtttatgttccttt |
151 |
Q |
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| T |
21232046 |
aggtccattgggataaaattcaatatatgactttatgttccttt |
21232003 |
T |
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