View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_high_3 (Length: 559)
Name: NF14124_high_3
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 280 - 543
Target Start/End: Complemental strand, 9223889 - 9223626
Alignment:
| Q |
280 |
aactattgtttccatctttttctttctgcacattatatctcaataaccatggccctccataactatttgaaagctctgttttactaaacacaaagatttg |
379 |
Q |
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| T |
9223889 |
aactattgtttccatctttttctttctgcacattatatctcaataaccatggccctccataactatttgaaagctctgttttactaaacacaaagatttg |
9223790 |
T |
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| Q |
380 |
aattcactgcagtcaaaacacaatgcaatcaagaagtcggtggtattggataaaaagatcaaacggcctatatttcacattactgaacttaagatacaaa |
479 |
Q |
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| T |
9223789 |
aattcactgcagtcaaaacacaatgcaatcaagaagtcggtggtattggataaaaagatcaaacggcctatatttcacattactgaacttaagatacaaa |
9223690 |
T |
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| Q |
480 |
tcatttcatcttaatccaatgactccgatccaacggctacagtgaacccaaatcctagacccta |
543 |
Q |
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| T |
9223689 |
tcatttcatcttaatccaatgactccgatccaacggctacagtgaacccaaatcctagacccta |
9223626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 9224141 - 9223939
Alignment:
| Q |
17 |
atttattatagaaaattattattgttattttacgtgtgtggttgtggttgtggttgagatggtttatgtaacaaaaaactctttgctggatcaaaaacag |
116 |
Q |
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| T |
9224141 |
atttattatagaaaattattattgttattttacgtatgtggttg------------agatggtttatgtaacaaaaaactctttgctggatcaaaaacag |
9224054 |
T |
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| Q |
117 |
agagatatggatgaaaaaattatcgataaaattactatatatatcattgaattatccaacnnnnnnntgaaaatatccttccataactattaatatcaag |
216 |
Q |
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| T |
9224053 |
agagatatggatgcaaaaattatcgataaaattactatatatatcattgaattatccaacaaaaaaatgaaaatatccttccataactattaatatcaag |
9223954 |
T |
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| Q |
217 |
atgttgacagcacct |
231 |
Q |
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| T |
9223953 |
atgttgacagcacct |
9223939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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