View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_high_6 (Length: 484)
Name: NF14124_high_6
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 3810553 - 3811007
Alignment:
| Q |
15 |
ataattttctcacattatgaaactgaaagctgatgtaaaatttgacttataattggtgcaggtatgcttcggagatggctgtgatatttatccaatctgc |
114 |
Q |
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| T |
3810553 |
ataattttctcacattatgaaactgaaagctgatgtaaaatttgacttataattggtgcaggtatgcttcggagatggctgtgatatttatccaatctgc |
3810652 |
T |
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| Q |
115 |
aatatacataggaataatagcaatgacgcatttggcaaggccgagcctctcaaaaatatgttttaggcgttccgataagagcatcaccctggcacacaac |
214 |
Q |
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| T |
3810653 |
aatatacataggaataatagcaatgacgcgtttggcaaggccgagcctctcaaaaatatgttttaggcgttccgataagagcatcaccctggcacacagc |
3810752 |
T |
|
| Q |
215 |
agcctaaaattagtagcattgtggtgcatacttgctgcttacgtaacacctgtctttatcatacctcacacaattcaccctctacttggttggatcctgt |
314 |
Q |
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| T |
3810753 |
agcctaaaattagtagcattgtggtgcatacttgctgcttacgtaacaccagtctttatcatacctcacacaattcaccctctacttggttggatcctgt |
3810852 |
T |
|
| Q |
315 |
attttcttggttcttttgcattttgctcaattgcaattaatatctttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcct |
414 |
Q |
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| T |
3810853 |
attttcttggttcttttgcattttgctcaattgcaattaatatctttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcct |
3810952 |
T |
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| Q |
415 |
aatggttatggcatttccttggtatcctgatggaatagtaagagctatgtctgtg |
469 |
Q |
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| T |
3810953 |
aatggttatggcatttccttggtatcctgatggaatagtaagagctatgtctgtg |
3811007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 41672925 - 41672783
Alignment:
| Q |
89 |
atggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcatttggcaaggccgagcctctcaaaaatatgttttaggcgttccg |
188 |
Q |
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|||||||||||| |||| ||||| |||||||| | |||||||||||| |||| | |||||||||||| |||||||||||| |||| | | || || | |
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| T |
41672925 |
atggctgtgatacttattcaatcagcaatatatcttggaataatagcactgactcgtttggcaaggccaagcctctcaaaattatgctaccgccgctctg |
41672826 |
T |
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| Q |
189 |
ataagagcatcaccctggcacacaacagcctaaaattagtagc |
231 |
Q |
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| T |
41672825 |
ataagagcatcacattggtacaaaacatcctcaaactagtagc |
41672783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 460
Target Start/End: Complemental strand, 41672655 - 41672554
Alignment:
| Q |
359 |
tttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagag |
458 |
Q |
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|||||||| ||| ||||||| ||| || | || ||| |||| ||| ||||||| |||| || ||||| |||||||||||||| ||||| ||||||||| |
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| T |
41672655 |
tttcttcttccagtgttaccggttctgatgccgtggtttggtattattggagttttaattgtcatggcgtttccttggtatccggatggggtagtaagag |
41672556 |
T |
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| Q |
459 |
ct |
460 |
Q |
| |
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|| |
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| T |
41672555 |
ct |
41672554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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