View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_1 (Length: 766)
Name: NF14124_low_1
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 5e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 48105482 - 48105337
Alignment:
| Q |
42 |
tctcaaattgattttcctcccaaaattgaatcatcatctat------ccttcattcatcttcctcttgatggctttcgatttctaacccatttgtaacaa |
135 |
Q |
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| T |
48105482 |
tctcaaattgattttcctcccaaaattgaatcatcatctatatctatccttcattcatcttcctcttgatggctttcgatttctaacccatttgtaacaa |
48105383 |
T |
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| Q |
136 |
acaac---aacaccaaatctgtaagttgtttactaacatgaggcca |
178 |
Q |
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| T |
48105382 |
acaacaacaacaccaaatttgtaagttgtttactaacatgaggcca |
48105337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 230 - 368
Target Start/End: Complemental strand, 48105270 - 48105117
Alignment:
| Q |
230 |
gaagatgatgacagaacgataaagcagatatcgggacaatgaagattgagatg---------------tgaagactgaggaatgacgacacaacgatggt |
314 |
Q |
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| T |
48105270 |
gaagatgatgacagaacgataaagcagatatcgggacaatgaagattgagatggttgtgattgtgatgtgaggactgaggaatgacgacacaacgatggt |
48105171 |
T |
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| Q |
315 |
ggaggaaggatctcatgtctcttctatctcggttttgatttcaatttgggaaca |
368 |
Q |
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| T |
48105170 |
tgaggaaggatctgatgtctcttctatctcggttttgatttcaatttggtaaca |
48105117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 48105302 - 48105266
Alignment:
| Q |
176 |
ccacattgaaactgaaacagaggatgaagacggaaga |
212 |
Q |
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| T |
48105302 |
ccacattgaaactgaaacagaggatgaagacggaaga |
48105266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 48105035 - 48105002
Alignment:
| Q |
440 |
aaacattaatggcatggaaattaaagtatgatcg |
473 |
Q |
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| T |
48105035 |
aaacattaatggcatggaaattaaaatatgatcg |
48105002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 627
Target Start/End: Original strand, 26076014 - 26076083
Alignment:
| Q |
558 |
attttagaaaatggatgataaaaaattaacaaaattgaaactagggggatcaaaattacatttaagccaa |
627 |
Q |
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| T |
26076014 |
attttagaaaatggggtatcaaaaattaacaaattagaaaatagggggatcaaaattgcatttaagccaa |
26076083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 701 - 748
Target Start/End: Complemental strand, 39403768 - 39403721
Alignment:
| Q |
701 |
aaacacataattatactaacagaagtttttctcgtcctactacttcat |
748 |
Q |
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| T |
39403768 |
aaacacataattatactaacacaaggttttcccgtcctactacttcat |
39403721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 624
Target Start/End: Original strand, 29834300 - 29834382
Alignment:
| Q |
542 |
agggattaaaaagttgattttagaaaatggatgataaaaaattaacaaaattgaaactagggggatcaaaattacatttaagc |
624 |
Q |
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| T |
29834300 |
agggatcaaaacgttgattttaaaaaatagaatataaaaagttaacaaatttaaaaataaggggatcaaaattgcatttaagc |
29834382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 595
Target Start/End: Original strand, 6305198 - 6305244
Alignment:
| Q |
549 |
aaaaagttgattttagaaaatggatgataaaaaattaacaaaattga |
595 |
Q |
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| T |
6305198 |
aaaatgttggttttagaaaatggagtataaaaaattaacaaaattga |
6305244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 624
Target Start/End: Original strand, 45879090 - 45879138
Alignment:
| Q |
575 |
ataaaaaattaacaaaattgaaactagggggatcaaaattacatttaagc |
624 |
Q |
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| T |
45879090 |
ataaaaaattaacaaaattgaaaat-tggggatcaaaattgcatttaagc |
45879138 |
T |
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