View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_11 (Length: 386)
Name: NF14124_low_11
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 49814391 - 49814006
Alignment:
| Q |
1 |
aaatctttggctaatcgtcctttattactgctccatagctatggtgggccccactatactctctctacttactatttcatcttctccttcttttcttttt |
100 |
Q |
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| T |
49814391 |
aaatctttggctaatcgtcctttattactgctccatagctatagtgggccccacaatactctctctacgtactatttcatcttctccttcttttcttttt |
49814292 |
T |
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| Q |
101 |
tcctatttatgttattacattattcattccactaccaacctaaaacatagtgaacaatttaatagtgacaccacaacagaaagaaaaatcagagaatgaa |
200 |
Q |
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| T |
49814291 |
tcctatttatgttattacattattcattccactaccaacctaaaacatagtgaacaatttaatagtgacaccacaacagaaagaaaaatcagagaatgaa |
49814192 |
T |
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| Q |
201 |
atatggttggtcttggtgttgtgcttgaagaacaacaaccacataagaaaaagtgtaatatcaacatcaacaacaacaataacacttatcaagttattaa |
300 |
Q |
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| T |
49814191 |
atatggttggtcttggtgttgtgcttgaagaacaacaaccacataagaaaaagtgtaatatcaacatcaacaacaacaataacacttatcaagttattaa |
49814092 |
T |
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| Q |
301 |
caaaactaccatgatgcttagcagcacaatcaacaacaatgcttcctctccactttcctaccactctccttttaaggtttcaactt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
49814091 |
caaaactaccatgatgcttagcagcacaatcaacaacaatgcttcctatccactttcctaccattctccttttaaggtttcaactt |
49814006 |
T |
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