View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_14 (Length: 314)
Name: NF14124_low_14
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 5439840 - 5439538
Alignment:
| Q |
1 |
cttacgtcccatatattttgttggctgacttgagaaattgtctaacctttcattgaccgggaagtttccttacctaaagttcaatcatctatttattgat |
100 |
Q |
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||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5439840 |
cttacgtcccatataccctcttggctgacttgagaaattgcctaacctttcattgaccgggaagtttccttgcctaaagttcaatcatctatttattgat |
5439741 |
T |
|
| Q |
101 |
gttggctaatatgatacttatttttaggtataaacaacaagtatttcacaaatttcaagtacttctaggtatttatggatatccaccaagaacannnnnn |
200 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
5439740 |
gttggctaatatgataattatttttaagtataaacaacaagtattccacaaatttcaagtacttgtaggtatttatggatatccaccgagaacatttttt |
5439641 |
T |
|
| Q |
201 |
nnaaatgatttgtataatcctttatttatttacctaaaatttaagaagcaaattcatcacattatttcatctcaatttaacaacaatagatcatcacatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5439640 |
ttaaatgatttgtataatcctttatttatttacctaaaatttaagaagcgaattcatcacattatttcatctcaatttaacaacaatagatcatcacatt |
5439541 |
T |
|
| Q |
301 |
cat |
303 |
Q |
| |
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||| |
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|
| T |
5439540 |
cat |
5439538 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 35066673 - 35066725
Alignment:
| Q |
64 |
gtttccttacctaaagttcaatcatctatttattgatgttggctaatatgata |
116 |
Q |
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||||||| |||||||||||||| ||||||| | |||||||||||| |||||| |
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| T |
35066673 |
gtttcctcacctaaagttcaattgtctatttgtcgatgttggctaacatgata |
35066725 |
T |
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