View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_15 (Length: 302)
Name: NF14124_low_15
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 54056996 - 54057219
Alignment:
| Q |
16 |
agatgaatgaagtttatatactttaaattattgactgtcttgatagtactggcagtttttatcgaagacataatcggtatctgatatttatttgtgtttg |
115 |
Q |
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| T |
54056996 |
agatgaatgaattttatatactttaaattattgactgtcttgatagcactgacagttttgatcgaagacataatcggtatttaatatttatttgtgtttg |
54057095 |
T |
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| Q |
116 |
acactga-acatataattatatacaattttc-ttttcaatgaaattccttaataagttgaacggttgaagtaaatgactcatcattcaagatattttaaa |
213 |
Q |
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| T |
54057096 |
acactgacacatataattatatacaattttctttttcaatgaagttccttaataggttgaacggttgaagtaaatgactcatcattcaagatattttaaa |
54057195 |
T |
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| Q |
214 |
ttgatttttttattctgttgtattc |
238 |
Q |
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|||| | |||||||||||||||||| |
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| T |
54057196 |
ttga-tgttttattctgttgtattc |
54057219 |
T |
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