View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14124_low_2 (Length: 720)

Name: NF14124_low_2
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14124_low_2
NF14124_low_2
[»] chr8 (28 HSPs)
chr8 (36-702)||(6447294-6447953)
chr8 (23-80)||(28378881-28378938)
chr8 (19-81)||(4798510-4798572)
chr8 (19-62)||(5184875-5184918)
chr8 (19-66)||(33570413-33570460)
chr8 (19-82)||(37154578-37154641)
chr8 (19-82)||(43468673-43468736)
chr8 (19-81)||(14010741-14010803)
chr8 (19-61)||(15042354-15042396)
chr8 (24-82)||(44360905-44360963)
chr8 (19-72)||(36359696-36359749)
chr8 (19-80)||(44070338-44070399)
chr8 (25-61)||(30542834-30542870)
chr8 (17-61)||(43874966-43875010)
chr8 (19-82)||(3379616-3379679)
chr8 (20-75)||(6978885-6978940)
chr8 (17-76)||(13537285-13537344)
chr8 (17-76)||(13626833-13626892)
chr8 (17-72)||(13702330-13702385)
chr8 (19-82)||(24074570-24074633)
chr8 (19-61)||(39484359-39484401)
chr8 (20-81)||(1032930-1032991)
chr8 (19-72)||(10184779-10184832)
chr8 (19-72)||(23239188-23239241)
chr8 (24-81)||(27868775-27868832)
chr8 (19-72)||(31373384-31373437)
chr8 (17-82)||(33982252-33982317)
chr8 (24-81)||(40249847-40249904)
[»] chr6 (25 HSPs)
chr6 (19-82)||(15126306-15126369)
chr6 (19-82)||(34396147-34396210)
chr6 (17-82)||(5134402-5134467)
chr6 (19-82)||(25020496-25020559)
chr6 (19-81)||(18904652-18904714)
chr6 (20-82)||(22501084-22501146)
chr6 (19-80)||(7563546-7563607)
chr6 (17-61)||(3230953-3230997)
chr6 (19-75)||(7709948-7710004)
chr6 (19-66)||(6530188-6530235)
chr6 (19-82)||(12127877-12127940)
chr6 (19-82)||(19165414-19165477)
chr6 (19-82)||(22389718-22389781)
chr6 (22-72)||(5678195-5678245)
chr6 (19-61)||(9438366-9438408)
chr6 (19-61)||(9491724-9491766)
chr6 (19-61)||(12089161-12089203)
chr6 (19-61)||(22983644-22983686)
chr6 (19-61)||(23804722-23804764)
chr6 (17-71)||(31761216-31761270)
chr6 (24-66)||(32057103-32057145)
chr6 (20-66)||(35190828-35190874)
chr6 (20-61)||(6270598-6270639)
chr6 (17-82)||(6652271-6652336)
chr6 (19-72)||(30566122-30566175)
[»] chr3 (36 HSPs)
chr3 (17-70)||(16006486-16006539)
chr3 (19-82)||(54983673-54983736)
chr3 (19-82)||(14417932-14417995)
chr3 (20-89)||(31698598-31698667)
chr3 (17-82)||(43566764-43566829)
chr3 (20-71)||(53472690-53472741)
chr3 (19-81)||(46328893-46328955)
chr3 (19-81)||(50144575-50144637)
chr3 (17-66)||(13874818-13874867)
chr3 (17-66)||(49019245-49019294)
chr3 (19-79)||(28206508-28206568)
chr3 (17-61)||(43774247-43774291)
chr3 (29-81)||(47427797-47427849)
chr3 (19-66)||(335014-335061)
chr3 (19-82)||(4072701-4072764)
chr3 (19-62)||(20623765-20623808)
chr3 (19-82)||(33206821-33206884)
chr3 (19-82)||(34344746-34344809)
chr3 (17-72)||(39492883-39492938)
chr3 (17-72)||(44953139-44953194)
chr3 (19-66)||(49146148-49146195)
chr3 (19-85)||(8959513-8959579)
chr3 (19-77)||(13539937-13539995)
chr3 (22-80)||(17439935-17439993)
chr3 (17-71)||(23820691-23820745)
chr3 (19-61)||(30157066-30157108)
chr3 (20-62)||(32508782-32508824)
chr3 (19-81)||(36727432-36727494)
chr3 (17-71)||(37279689-37279743)
chr3 (29-71)||(38682237-38682279)
chr3 (19-61)||(42832051-42832093)
chr3 (19-61)||(45713544-45713586)
chr3 (20-82)||(47191438-47191500)
chr3 (19-72)||(14271905-14271958)
chr3 (28-81)||(38288437-38288490)
chr3 (20-61)||(49639093-49639134)
[»] chr1 (27 HSPs)
chr1 (17-82)||(32711112-32711177)
chr1 (17-82)||(21884637-21884702)
chr1 (19-82)||(46116142-46116205)
chr1 (19-75)||(15774287-15774343)
chr1 (19-82)||(19793590-19793653)
chr1 (19-82)||(27745221-27745284)
chr1 (19-82)||(29331132-29331195)
chr1 (19-82)||(37733819-37733882)
chr1 (19-82)||(39994816-39994879)
chr1 (19-82)||(47939167-47939230)
chr1 (17-71)||(24662044-24662098)
chr1 (19-81)||(52840940-52841002)
chr1 (19-72)||(11405520-11405573)
chr1 (19-72)||(12073055-12073108)
chr1 (19-72)||(18923863-18923916)
chr1 (15-71)||(4616933-4616989)
chr1 (17-61)||(49251384-49251428)
chr1 (19-82)||(9527490-9527553)
chr1 (19-82)||(34560306-34560369)
chr1 (19-82)||(42832011-42832074)
chr1 (19-82)||(49916504-49916567)
chr1 (20-82)||(23345025-23345087)
chr1 (19-61)||(39433422-39433464)
chr1 (29-82)||(4429450-4429503)
chr1 (19-56)||(6014512-6014549)
chr1 (20-61)||(22346484-22346525)
chr1 (17-82)||(38019915-38019980)
[»] chr7 (21 HSPs)
chr7 (19-82)||(44843755-44843818)
chr7 (17-82)||(22965926-22965991)
chr7 (19-80)||(35368460-35368521)
chr7 (19-71)||(8214174-8214226)
chr7 (19-66)||(8724444-8724491)
chr7 (22-81)||(30604389-30604448)
chr7 (19-82)||(38451927-38451990)
chr7 (19-80)||(34948170-34948231)
chr7 (19-72)||(42286388-42286441)
chr7 (17-61)||(30644231-30644275)
chr7 (19-71)||(45198077-45198129)
chr7 (19-66)||(17997722-17997769)
chr7 (19-82)||(22047584-22047647)
chr7 (19-82)||(29658240-29658303)
chr7 (19-82)||(42887218-42887281)
chr7 (19-82)||(47403556-47403619)
chr7 (19-61)||(14102525-14102567)
chr7 (19-61)||(14412542-14412584)
chr7 (19-61)||(21285342-21285384)
chr7 (20-61)||(11680736-11680777)
chr7 (20-61)||(43902525-43902566)
[»] chr4 (21 HSPs)
chr4 (17-71)||(34684630-34684684)
chr4 (17-82)||(38433373-38433438)
chr4 (19-81)||(12856248-12856310)
chr4 (17-72)||(3442905-3442960)
chr4 (19-82)||(22478708-22478771)
chr4 (19-61)||(28221296-28221338)
chr4 (17-82)||(30295575-30295640)
chr4 (17-82)||(30324477-30324542)
chr4 (19-83)||(3465647-3465711)
chr4 (19-71)||(12820384-12820436)
chr4 (19-62)||(32885752-32885795)
chr4 (19-82)||(53291506-53291569)
chr4 (20-62)||(36008340-36008382)
chr4 (19-61)||(39992899-39992941)
chr4 (17-63)||(43606087-43606133)
chr4 (19-73)||(48512263-48512317)
chr4 (19-61)||(49280658-49280700)
chr4 (17-66)||(9285643-9285692)
chr4 (19-60)||(15638750-15638791)
chr4 (19-72)||(44374057-44374110)
chr4 (29-82)||(52560838-52560891)
[»] chr2 (20 HSPs)
chr2 (20-84)||(7086318-7086382)
chr2 (19-75)||(34018045-34018101)
chr2 (30-82)||(45523740-45523792)
chr2 (17-72)||(38820636-38820691)
chr2 (19-82)||(44721673-44721735)
chr2 (17-61)||(3179386-3179430)
chr2 (19-75)||(14483632-14483688)
chr2 (19-82)||(580751-580814)
chr2 (18-61)||(3364788-3364831)
chr2 (17-84)||(16028074-16028141)
chr2 (19-66)||(16973972-16974019)
chr2 (19-66)||(22297436-22297483)
chr2 (25-84)||(30471937-30471996)
chr2 (17-60)||(30474185-30474228)
chr2 (19-61)||(8234781-8234823)
chr2 (19-61)||(11133140-11133182)
chr2 (19-81)||(17154713-17154775)
chr2 (19-81)||(29664667-29664729)
chr2 (19-60)||(2114425-2114466)
chr2 (17-66)||(34620580-34620629)
[»] chr5 (24 HSPs)
chr5 (19-72)||(30403814-30403867)
chr5 (17-61)||(29144204-29144248)
chr5 (17-61)||(33729840-33729884)
chr5 (20-83)||(2029095-2029158)
chr5 (211-267)||(39429073-39429131)
chr5 (19-81)||(20945860-20945922)
chr5 (17-61)||(1244716-1244760)
chr5 (18-82)||(5156960-5157024)
chr5 (17-61)||(7234861-7234905)
chr5 (19-71)||(9408929-9408981)
chr5 (22-82)||(9577360-9577420)
chr5 (21-81)||(42070442-42070502)
chr5 (20-72)||(43166734-43166786)
chr5 (17-56)||(4216809-4216848)
chr5 (17-72)||(12238794-12238849)
chr5 (19-82)||(29096276-29096339)
chr5 (19-61)||(8015899-8015941)
chr5 (19-61)||(19058993-19059035)
chr5 (20-82)||(32158382-32158444)
chr5 (19-61)||(40339089-40339131)
chr5 (20-61)||(6561963-6562004)
chr5 (19-56)||(13754070-13754107)
chr5 (20-61)||(15978666-15978707)
chr5 (29-82)||(22872786-22872839)
[»] scaffold1990 (1 HSPs)
scaffold1990 (17-73)||(956-1012)
[»] scaffold0092 (1 HSPs)
scaffold0092 (17-73)||(47294-47350)
[»] scaffold0343 (1 HSPs)
scaffold0343 (20-71)||(8625-8676)
[»] scaffold1086 (1 HSPs)
scaffold1086 (19-72)||(2552-2605)
[»] scaffold0044 (1 HSPs)
scaffold0044 (20-73)||(49885-49938)


Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 36 - 702
Target Start/End: Original strand, 6447294 - 6447953
Alignment:
Q  36 ccttttaaggtgaattctaaccactaaactatctgaccaataaaaaagatcaataatgaaacgatttgacttacaattaattggattaatatcaaatcaa 135  Q
    |||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6447294 ccttataaggtgaattctaactactagactacctgaccaataaaaaagatcaataatgaaacgatttgacttacaattaattggattaatatcaaatcaa 6447393  T
Q  136 ttagaaataccaagtttgattgatgattgaaataattattaccagattttactatctccacatcaaaccgcacattattcttaaaacaatattcttaaaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6447394 ttagaaataccaagtttgattgatgattgaaataattattaccagattttactatctccacatcaaaccgcacattattcttaaaacaatattcttaaaa 6447493  T
Q  236 ttaaaaatatgcatcataatcattaatttatctccttcgaaaaaaatcattaatttatcattctctaaaataatattcttttnnnnnnnnntatgaaaga 335  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||          |||||||||    
T  6447494 ttaaaaatatgcatcataatcattaatttatctcctt-aaaaaaaatcattaatttatcattctctaaaacaatattctttcaataaaaaatatgaaaga 6447592  T
Q  336 tttctccattctctcccttatatttctcacccttcaaagttctctctttttctcccctccaaactcctaaaaaacctaagtgatcgtgttcgattaagat 435  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6447593 tttctccat--tctcccttatatttctcacccttcaaagttctctcttttcctcccctccaaactcctaaaaaacctaagtgatcgtgttcgattaagat 6447690  T
Q  436 tcattgatccaaaagatatgaatttcgtgaaagaagctcaaagaatactatttgaaagnnnnnnnntacattaaaagaatttagtgataaaagtaaaatt 535  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||||    
T  6447691 tcattgatccaaaggatatgaatttcgtgaaagaagctcaaagaatactatttgaaa----aaaaaaatattaaaagaatttagtgataaaagtaaaatt 6447786  T
Q  536 atacttttccttatgatttaactctttaatttgactttttcaatagtagaagaatttgacaagtgcaacattgtgactccatttcaattgtgggaaggat 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6447787 atacttttccttatgatttaactctttaatttgactttttcaatagtagaagaatttgacaagtgcaacattgtgactccatttcaattgtgggaaggat 6447886  T
Q  636 aaaatatgaaaacaggacatcaactgtggggaaggagaatagaagactatatatgtggttgaaaatc 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6447887 aaaatatgaaaacaggacatcaactgtggggaaggagaatagaagactatatatgtggttgaaaatc 6447953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 28378881 - 28378938
Alignment:
Q  23 ccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaa 80  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  28378881 ccccacttattcaccttataaggtgaattctaaccactaaactacctgaccaaaaaaa 28378938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 4798572 - 4798510
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| |||| |||||||| |||||    
T  4798572 gacaccccacttattcaccttgtaaggtgaattctagccactagactacctgaccaaaaaaaa 4798510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 5184918 - 5184875
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaa 62  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||    
T  5184918 gacaccccacttattcaccttataaggtgaattctaaccactaa 5184875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 33570460 - 33570413
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  33570460 gacaccccacttattcaccttataaggtgaattctagccactaaacta 33570413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 37154578 - 37154641
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||| ||||||||||||||  ||||| |||| ||||| || ||||||    
T  37154578 gacaccccatttattcaccttataaggtgaattctaggcactagactacctgacaaaaaaaaaa 37154641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 43468736 - 43468673
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||||||||| || ||||||    
T  43468736 gacaccccacttattcaccttataaggtgaattctagccactaggctatctgacaaaaaaaaaa 43468673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14010803 - 14010741
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||| ||||||| ||||||| ||||||||| || |||||    
T  14010803 gacaccccacttattcaccttataaggtaaattctagccactaagctatctgacaaaaaaaaa 14010741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 15042396 - 15042354
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  15042396 gacaccccacttattcaccttataaggtgaattctaaccacta 15042354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 44360963 - 44360905
Alignment:
Q  24 cccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||| |||| |||||| |||||||||||||| |||||| ||||||||||||| ||||||    
T  44360963 cccacttatccaccttataaggtgaattctagccactagactatctgaccaaaaaaaaa 44360905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 36359749 - 36359696
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  36359749 gacaccccacttattcaccttataaggtgaattctagccactagactacctgac 36359696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 44070399 - 44070338
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaa 80  Q
    ||||||| | ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||    
T  44070399 gacaccctacttattcaccttataaggtgaattctagccactaaactacctaaccaaaaaaa 44070338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 30542834 - 30542870
Alignment:
Q  25 ccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30542834 ccatttattcaccttataaggtgaattctaaccacta 30542870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 43875010 - 43874966
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||    
T  43875010 cagacaccccacttattcaccttataaggtgaattctaacaacta 43874966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3379679 - 3379616
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||| ||| ||| ||||| || ||||||    
T  3379679 gacaccccacttattcaccttataaggtgaattctagccattaagctacctgacaaagaaaaaa 3379616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 6978885 - 6978940
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaa 75  Q
    |||| ||||||||||||||| ||| |||||||||| ||| || |||||||||||||    
T  6978885 acactccatttattcaccttataaagtgaattctagccattagactatctgaccaa 6978940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 13537344 - 13537285
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaat 76  Q
    ||||||||||| ||||||| ||| ||||||||||| || |||||||||||  ||||||||    
T  13537344 cagacaccccacttattcatcttataaggtgaattgtagccactaaactacttgaccaat 13537285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 13626892 - 13626833
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaat 76  Q
    ||||||||||| ||||||| ||| ||||||||||| || |||||||||||  ||||||||    
T  13626892 cagacaccccacttattcatcttataaggtgaattgtagccactaaactacttgaccaat 13626833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 13702385 - 13702330
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||||| || ||||||||||| |||||||||||||| ||||||| ||| |||||    
T  13702385 cagacacctcacttattcaccttataaggtgaattctagccactaagctagctgac 13702330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 24074570 - 24074633
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||| || ||||||||||| |||||||||||||| ||||||  ||| |||||||| ||||||    
T  24074570 gacacctcacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaaa 24074633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 39484401 - 39484359
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||    
T  39484401 gacaccccacttattcatcttataaggtgaattctaaccacta 39484359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 1032991 - 1032930
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    |||||||| ||||||||||| |||| |||||||||||||| | || ||||||| || |||||    
T  1032991 acaccccacttattcaccttataagatgaattctaaccaccagacaatctgacaaaaaaaaa 1032930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 10184832 - 10184779
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||| ||||||||||||||| |||||||||||||| ||| || |||| |||||    
T  10184832 gacactccatttattcaccttataaggtgaattctagccattagactacctgac 10184779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 23239188 - 23239241
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||||||||| ||| ||||||| ||||||||| |||| |||||    
T  23239188 gacaccccacttattcaccttataaagtgaattttaaccactagactacctgac 23239241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 27868775 - 27868832
Alignment:
Q  24 cccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||||| |||| |||||||||||||| ||| || |||| ||||| ||||||||    
T  27868775 cccatttattctccttataaggtgaattctagccattatactacctgacaaataaaaa 27868832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 31373384 - 31373437
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||| ||||| |||||||||| |||||||||||||| |||||| |||| |||||    
T  31373384 gacatcccatatattcaccttataaggtgaattctagccactagactagctgac 31373437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 33982252 - 33982317
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||||| || |||||||| || |||||||||||||| ||| || |||||||||| || ||||||    
T  33982252 cagacaccgcacttattcactttataaggtgaattctagccaatagactatctgacaaaaaaaaaa 33982317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 40249904 - 40249847
Alignment:
Q  24 cccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    |||| ||||||||||| |||| ||||||||||||||||  ||| ||||| ||||||||    
T  40249904 cccacttattcaccttataagatgaattctaaccactaggctacctgacaaataaaaa 40249847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 15126306 - 15126369
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||    
T  15126306 gacaccccatttattcaccttataaggtgaattctaaccattaaactatctgactaaaaaaaaa 15126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 34396147 - 34396210
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||| ||||||||||||| |||||||||||||||||| || |||| |||||||| ||||||    
T  34396147 gacaccctatttattcaccttataaggtgaattctaaccaatagactacctgaccaaaaaaaaa 34396210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5134467 - 5134402
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| ||||||    
T  5134467 cagacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaaa 5134402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 25020559 - 25020496
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| ||||||    
T  25020559 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaaa 25020496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 18904714 - 18904652
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| |||||    
T  18904714 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaa 18904652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 22501084 - 22501146
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||||| ||||||||||| |||||||||||||| |||||| |||| ||||| || ||||||    
T  22501084 acaccccacttattcaccttgtaaggtgaattctagccactagactacctgacaaaaaaaaaa 22501146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 7563607 - 7563546
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaa 80  Q
    ||||||||| ||||||||||| ||||||||||| || ||||||||||| || ||||| ||||    
T  7563607 gacaccccacttattcaccttataaggtgaattttagccactaaactacctaaccaaaaaaa 7563546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 3230997 - 3230953
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||    
T  3230997 cagacaccccatttattcaccttaaaaggtgaattccaaccacta 3230953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7709948 - 7710004
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaa 75  Q
    |||| |||| ||||||||||| |||||||||||||| |||||||||||  |||||||    
T  7709948 gacatcccacttattcaccttataaggtgaattctatccactaaactacatgaccaa 7710004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 6530235 - 6530188
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| ||||    
T  6530235 gacaccccacttattcaccttataaggtgaattctagccactagacta 6530188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 12127940 - 12127877
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||| ||| ||||||||||| |||||||||||||| |||||| |||| ||||| || ||||||    
T  12127940 gacacgccacttattcaccttataaggtgaattctagccactagactacctgactaaaaaaaaa 12127877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 19165414 - 19165477
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| ||||| || ||||||    
T  19165414 gacaccccacttattcaccttataaggtgaattctagccactagtctacctgacaaaaaaaaaa 19165477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 22389781 - 22389718
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| || ||| |||| ||||| || ||||||    
T  22389781 gacaccccacttattcaccttataaggtgaattctagccgctagactacctgacaaaaaaaaaa 22389718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 5678245 - 5678195
Alignment:
Q  22 accccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  5678245 accccacttattcaccttataaggtgaattctatccactagactacctgac 5678195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9438366 - 9438408
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| | ||||||||| |||||||||||||||||||||    
T  9438366 gacaccccactcattcaccttataaggtgaattctaaccacta 9438408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 9491766 - 9491724
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||    
T  9491766 gacaccccacttattcaccttataagatgaattctaaccacta 9491724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12089161 - 12089203
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  12089161 gacaccccacttattcaccttataaggtgaattctagccacta 12089203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 22983644 - 22983686
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||    
T  22983644 gacaccccacttattcatcttataaggtgaattctaaccacta 22983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 23804764 - 23804722
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||    
T  23804764 gacaccccacttattcatcttataaggtgaattctaaccacta 23804722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 31761216 - 31761270
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||| | ||||||||||| ||||||||||||||| |||||| ||| ||||    
T  31761216 cagacaccctacttattcaccttataaggtgaattctaatcactaagctacctga 31761270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 32057103 - 32057145
Alignment:
Q  24 cccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||    
T  32057103 cccacttattcatcttataaggtgaattctaaccactaaacta 32057145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 35190828 - 35190874
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||    
T  35190828 acaccccacttattcaccttataaggtgaattctagccactagacta 35190874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 6270639 - 6270598
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||| ||||||||||| |||||||||||||| ||||||    
T  6270639 acaccccaattattcaccttataaggtgaattctagccacta 6270598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6652271 - 6652336
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||||| ||| ||||||| || ||||||  ||| ||||| || ||||||    
T  6652271 cagacaccccatttattcaccttataaagtgaattatagccactaggctacctgacaaaaaaaaaa 6652336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30566122 - 30566175
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||||||||| |||||||||||| | |||||| |||| |||||    
T  30566122 gacaccccacttattcaccttataaggtgaattccagccactagactacctgac 30566175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 16006539 - 16006486
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctg 70  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  16006539 cagacaccccacttattcaccttataaggtgaattctaaccactaaactatctg 16006486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 54983736 - 54983673
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||||||    
T  54983736 gacaccccatttattcaccttataaggtgaattctagccactaaactacctgacaaaaaaaaaa 54983673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14417932 - 14417995
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||| ||||||    
T  14417932 gacaccccacttattcaccttataaggtgaattctagccactaagctacctgaccaaaaaaaaa 14417995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31698598 - 31698667
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaagatcaat 89  Q
    |||||||| ||||||| ||| |||||||||||||| |||||| |||||||||| || ||| |||||||||    
T  31698598 acaccccacttattcatcttataaggtgaattctagccactagactatctgacaaaaaaagaagatcaat 31698667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 43566829 - 43566764
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| ||||||    
T  43566829 cagacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaaa 43566764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 53472690 - 53472741
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    |||||||| |||||||| || |||||||||||||| ||||||||||||||||    
T  53472690 acaccccacttattcactttataaggtgaattctagccactaaactatctga 53472741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 46328955 - 46328893
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| |||||    
T  46328955 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaa 46328893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 50144637 - 50144575
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||| ||| ||||||||||| |||||||||||||| |||||| |||||||||| || |||||    
T  50144637 gacactccacttattcaccttataaggtgaattctacccactagactatctgacaaaaaaaaa 50144575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 13874867 - 13874818
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    |||||| |||||||||||||||| |||||||||||||| |||||| ||||    
T  13874867 cagacatcccatttattcaccttataaggtgaattctagccactagacta 13874818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 49019245 - 49019294
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    |||||||| || ||||||||||| ||||||||||||||||||||| ||||    
T  49019245 cagacaccgcacttattcaccttataaggtgaattctaaccactagacta 49019294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28206568 - 28206508
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaa 79  Q
    |||| |||| ||||||||||| |||||||||||||||||||||  ||| |||| |||||||    
T  28206568 gacatcccacttattcaccttataaggtgaattctaaccactaggctacctgatcaataaa 28206508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 43774247 - 43774291
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  43774247 cagacaccccacttattcaccttataaggtgaattctagccacta 43774291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 47427797 - 47427849
Alignment:
Q  29 ttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||||| |||||||||| ||||||||||| ||| |||||||| |||||    
T  47427797 ttattcaccttataaggtgaatactaaccactaagctacctgaccaaaaaaaa 47427849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 335061 - 335014
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||| ||||||||||| |||||||||||||| | |||||||||    
T  335061 gacaccccacttattcaccttataaggtgaattctagctactaaacta 335014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 4072764 - 4072701
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||  ||||||||||| ||||||||||| |||| ||||||||||| ||| || ||||||    
T  4072764 gacacccctcttattcaccttataaggtgaattttaactactaaactatccgacaaaaaaaaaa 4072701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 20623808 - 20623765
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaa 62  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||    
T  20623808 gacaccccacttattcaccttataaggtgaattctagccactaa 20623765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 33206821 - 33206884
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||| | ||||||    
T  33206821 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccgaaaaaaaa 33206884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 34344809 - 34344746
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| ||||| || ||||||    
T  34344809 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgacaaaaaaaaaa 34344746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 39492883 - 39492938
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||||| ||||| || || |||||||||||||||||||||| ||| |||||    
T  39492883 cagacaccccacttatttacgttataaggtgaattctaaccactaagctacctgac 39492938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 44953194 - 44953139
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||||| |||||||||||||| ||| |||||||||| |||||| | ||||||||    
T  44953194 cagacacctcatttattcaccttataatgtgaattctagccactagattatctgac 44953139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 49146148 - 49146195
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||| |||||||| || |||||||||||||| |||||||||||    
T  49146148 gacaccccacttattcactttataaggtgaattctagccactaaacta 49146195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 8959513 - 8959579
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaagat 85  Q
    |||||| || ||||||| ||| |||||||||||||  ||||||| ||| |||||||| |||||||||    
T  8959513 gacacctcacttattcatcttataaggtgaattcttgccactaagctacctgaccaaaaaaaaagat 8959579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 13539995 - 13539937
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaata 77  Q
    ||||||||| ||||| ||||| |||||||||||||| ||| || |||| ||||||||||    
T  13539995 gacaccccacttatttaccttataaggtgaattctagccattagactacctgaccaata 13539937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 17439993 - 17439935
Alignment:
Q  22 accccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaa 80  Q
    |||||| ||||||||||| ||||||||||| |||||||||  ||| |||||||| ||||    
T  17439993 accccacttattcaccttataaggtgaattttaaccactaggctacctgaccaaaaaaa 17439935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 23820691 - 23820745
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||||| ||||||| ||| |||||||||||||| |||| || ||||||||    
T  23820691 cagacaccccacttattcatcttataaggtgaattctagccaccaagctatctga 23820745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 30157066 - 30157108
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||| | ||||||||||| |||||||||||||||||||||    
T  30157066 gacacccaacttattcaccttataaggtgaattctaaccacta 30157108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 32508824 - 32508782
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaa 62  Q
    |||||||| ||||||||||| |||||||||||||| |||||||    
T  32508824 acaccccacttattcaccttataaggtgaattctagccactaa 32508782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 36727494 - 36727432
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||| ||| |||||||||||||| |||||||  || |||||||| |||||    
T  36727494 gacaccccacttattcatcttataaggtgaattctagccactaagttacctgaccaaaaaaaa 36727432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 37279689 - 37279743
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||||| ||||||||||| ||||||||||| ||  |||||||||| ||||    
T  37279689 cagacaccccacttattcaccttataaggtgaattatagtcactaaactacctga 37279743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 38682279 - 38682237
Alignment:
Q  29 ttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||    
T  38682279 ttattcatcttataaggtgaattctaaccactaagctatctga 38682237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 42832093 - 42832051
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||    
T  42832093 gacactccatttattcaccttataaggtgaattctagccacta 42832051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 45713544 - 45713586
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||    
T  45713544 gacaccccacttattcaccttataaggtgaattctaactacta 45713586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 47191438 - 47191500
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||||| ||||||||||| |||| ||||||||| ||||||  ||| |||||||| ||||||    
T  47191438 acaccccacttattcaccttataagatgaattctagccactaggctacctgaccaaaaaaaaa 47191500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 14271958 - 14271905
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||| |||||||||| ||| |||||||||||||| ||| || ||||||||||    
T  14271958 gacacctcatttattcatcttataaggtgaattctagccattagactatctgac 14271905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 38288437 - 38288490
Alignment:
Q  28 tttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    |||||||||||| |||||||||||| | ||||||||||| ||||| || |||||    
T  38288437 tttattcaccttataaggtgaattccagccactaaactacctgacaaaaaaaaa 38288490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 49639093 - 49639134
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||| ||||||||||| |||||||||||||| ||||||    
T  49639093 acaccccacttattcaccttgtaaggtgaattctagccacta 49639134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 32711177 - 32711112
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||    
T  32711177 cagacaccccacttattcaccttataaggtgaattctagccactagactatctgaccaaaaaaaaa 32711112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 21884637 - 21884702
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||  ||||||| ||||||    
T  21884637 cagacaccccacttattcaccttataaggtgaattctaaccactagactacatgaccaaaaaaaaa 21884702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 46116205 - 46116142
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  ||| |||||||| ||||||    
T  46116205 gacaccccaattattcaccttataaggtgaattctaaccactaggctacctgaccaaaaaaaaa 46116142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 15774343 - 15774287
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaa 75  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||| ||| ||||||||    
T  15774343 gacaccccacttattcaccttataaggtgaattctagccactaagctacctgaccaa 15774287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 19793590 - 19793653
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  ||| ||||| || ||||||    
T  19793590 gacaccccacttattcaccttataaggtgaattctaaccactaggctacctgacaaaaaaaaaa 19793653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 27745221 - 27745284
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||| ||| |||| ||||| ||||||||||| |||| ||| ||||||    
T  27745221 gacaccccatttattcaccttataaagtgagttctagccactaaactacctgatcaacaaaaaa 27745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 29331195 - 29331132
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||| ||||||| || || |||||||||||||| ||||||||||||||||| || ||||||    
T  29331195 gacaccctatttatttacattataaggtgaattctagccactaaactatctgacaaaaaaaaaa 29331132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 37733819 - 37733882
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  ||| ||||| || ||||||    
T  37733819 gacaccccacttattcaccttataaggtgaattctaaccactaggctacctgacaaaaaaaaaa 37733882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 39994879 - 39994816
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||| |||| ||||||||||| |||||||||||||| ||||||  |||||||||||| ||||||    
T  39994879 gacatcccacttattcaccttataaggtgaattctagccactaggctatctgaccaaaaaaaaa 39994816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 47939230 - 47939167
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| | |||||||||||||||||||  ||| |||||||| ||||||    
T  47939230 gacaccccacttattcaccttattaggtgaattctaaccactaggctacctgaccaaaaaaaaa 47939167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 24662044 - 24662098
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||    
T  24662044 cagacaccccatttattcaacttataaggtgaattctagccactgaactacctga 24662098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 52840940 - 52841002
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||||||||| ||||| |||||| |||||||||||||| || ||||||| || |||||    
T  52840940 gacaccccatttatttaccttataaggtaaattctaaccactagacgatctgacaaaaaaaaa 52841002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 11405520 - 11405573
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||    
T  11405520 gacaccccacttattcaccttataaggtgaattctagccactaagctacctgac 11405573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 12073108 - 12073055
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||    
T  12073108 gacacccaatttattcaccttataaagtaaattctaaccactagactatctgac 12073055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 18923916 - 18923863
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||||||  |||||||||| |||||||||||||| ||| |||||||||||||    
T  18923916 gacaccccacgtattcaccttataaggtgaattctagccattaaactatctgac 18923863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 4616933 - 4616989
Alignment:
Q  15 cacagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||||||| ||||||||||| ||| |||||||||| |||||| |||| ||||    
T  4616933 cacagacaccccacttattcaccttataaagtgaattctagccactagactacctga 4616989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 49251428 - 49251384
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  49251428 cagacaccccacttattcaccttataatgtgaattctaaccacta 49251384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 9527490 - 9527553
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||| ||| |||||||||||||| |||||| |||| ||||| || ||||||    
T  9527490 gacaccccacttattcatcttataaggtgaattctagccactagactacctgacaaaaaaaaaa 9527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 34560369 - 34560306
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||| |||| ||||| || ||||||    
T  34560369 gacaccccacttattcaccttataaggtgaattctagtcactagactacctgacaaaaaaaaaa 34560306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 42832011 - 42832074
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| ||||||||||||||  |||||  ||||||||| || ||||||    
T  42832011 gacaccccacttattcaccttataaggtgaattctagtcactaggctatctgacaaaaaaaaaa 42832074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 49916504 - 49916567
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||| ||||||||||||  || |||||||||||||| ||||||||||| ||||| || ||||||    
T  49916504 gacatcccatttattcatattataaggtgaattctagccactaaactacctgacaaaaaaaaaa 49916567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 23345087 - 23345025
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||| ||| ||||||||||| |||||||||||||| |||||| ||||| |||| || ||||||    
T  23345087 acactccacttattcaccttataaggtgaattctagccactagactatttgacaaaaaaaaaa 23345025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 39433422 - 39433464
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  39433422 gacaccccacttattcaccttataaggtgaattctagccacta 39433464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 4429503 - 4429450
Alignment:
Q  29 ttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||| ||| |||||||||||||| |||||| |||||||||| || ||||||    
T  4429503 ttattcatcttataaggtgaattctagccactagactatctgacaaaaaaaaaa 4429450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 6014549 - 6014512
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaac 56  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  6014549 gacaccccacttattcaccttataaggtgaattctaac 6014512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 22346484 - 22346525
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||||||||||||||| ||||||||| |||| ||||||    
T  22346484 acaccccatttattcaccttataaggtgaactctagccacta 22346525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 38019980 - 38019915
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| ||| |||||||||| ||||||  ||| ||||| || ||||||    
T  38019980 cagacaccccacttattcaccttataaagtgaattctagccactaggctacctgacaaaaaaaaaa 38019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 44843755 - 44843818
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| || ||||||    
T  44843755 gacaccccatttattcatcttataaggtgaattctaaccactagactatctgacaaaaaaaaaa 44843818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 22965991 - 22965926
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||  ||||||| ||||||    
T  22965991 cagacaccccacttattcaccttataaggtgaattctaaccactagactacatgaccaaaaaaaaa 22965926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 35368460 - 35368521
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaa 80  Q
    ||||||||||||||||||||| |||||||||||||| |||||   |||||||||||| ||||    
T  35368460 gacaccccatttattcaccttataaggtgaattctagccactgggctatctgaccaaaaaaa 35368521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8214174 - 8214226
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||    
T  8214174 gacaccccacttattcaccttataaggtgaattctaaccactagactacctga 8214226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 8724444 - 8724491
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  8724444 gacaccccacttattcaccttataaggtgaattctaatcactaaacta 8724491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 30604448 - 30604389
Alignment:
Q  22 accccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    |||||| ||||||||||| |||||||||||||| |||||| |||||||||| || |||||    
T  30604448 accccaattattcaccttataaggtgaattctagccactagactatctgacaaaaaaaaa 30604389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 38451927 - 38451990
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| |||||||| || |||||||||||||| |||||| |||| |||||||| ||||||    
T  38451927 gacaccccacttattcacattataaggtgaattctagccactagactacctgaccaaaaaaaaa 38451990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34948170 - 34948231
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaa 80  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| ||||    
T  34948170 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaa 34948231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 42286388 - 42286441
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||| ||||| |||||||||||||||||| ||||||| |||||    
T  42286388 gacaccccacttatttaccttataaggtgaattctaaccaataaactacctgac 42286441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 30644231 - 30644275
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  30644231 cagacaccccacttattcaccttataaggtgaattctagccacta 30644275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 45198129 - 45198077
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||||||||||||||| |||||||||||||| ||| || |||| ||||    
T  45198129 gacaccccatttattcaccttataaggtgaattctagccattagactacctga 45198077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 17997769 - 17997722
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    |||||||||||||||||||||  ||||||||||||| |||||| ||||    
T  17997769 gacaccccatttattcaccttaaaaggtgaattctagccactagacta 17997722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 22047584 - 22047647
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||| ||||||||| ||||||| ||| ||||| || ||||||    
T  22047584 gacaccccacttattcaccttataagatgaattctagccactaagctacctgacaaaaaaaaaa 22047647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 29658303 - 29658240
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  |||  ||||||| ||||||    
T  29658303 gacaccccacttattcaccttataaggtgaattctagccactaggctacttgaccaaaaaaaaa 29658240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 42887218 - 42887281
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||| ||||| |||||||||||||| |||||| |||| | |||||| ||||||    
T  42887218 gacaccccacttatttaccttataaggtgaattctagccactagactacccgaccaaaaaaaaa 42887281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 47403619 - 47403556
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||| ||| ||||||||||| |||||||||||||| ||||||| ||| ||||| || ||||||    
T  47403619 gacactccacttattcaccttataaggtgaattctagccactaagctacctgacaaaaaaaaaa 47403556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 14102525 - 14102567
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||    
T  14102525 gacaccccacttattcaccttataaggtgaattctaactacta 14102567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 14412542 - 14412584
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||    
T  14412542 gacaccccacttattcaccttataaggtgaattctaactacta 14412584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21285384 - 21285342
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  21285384 gacaccccacttattcaccttataaggtgaattctagccacta 21285342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 11680777 - 11680736
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  11680777 acaccccatttattcaccttataatgtgaattctagccacta 11680736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 43902566 - 43902525
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||| ||||||||||| |||||||||||||| ||||||    
T  43902566 acaccccacttattcaccttataaggtgaattctagccacta 43902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 34684630 - 34684684
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  34684630 cagacaccccacttattcaccttataaggtgaattctaaccactacactatctga 34684684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38433373 - 38433438
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||||    
T  38433373 cagacaccccacttattcaccttataaggtgaattctaacaactaagctacctgaccaaaaaaaaa 38433438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 12856248 - 12856310
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  ||||||||| || |||||    
T  12856248 gacaccccacttattcaccttataaggtgaattctaaccactatgctatctgacaaaaaaaaa 12856310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 3442905 - 3442960
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||||| ||||||||||| |||||||||||||||||| || |||| |||||    
T  3442905 cagacaccccacttattcaccttataaggtgaattctaaccagtagactacctgac 3442960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 22478771 - 22478708
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||| |||||||||||||||| ||||   || |||||||| ||||||    
T  22478771 gacaccccatttattcaccttataaggtgaattctaactactaggttacctgaccaacaaaaaa 22478708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 28221338 - 28221296
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  28221338 gacaccccacttattcaccttataaggtgaattctaaccacta 28221296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30295575 - 30295640
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||||  ||| |||||||| ||||||    
T  30295575 cagacaccccacttattcaccttagaaggtgaattctagccactaggctacctgaccaaaaaaaaa 30295640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30324477 - 30324542
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||||  ||| |||||||| ||||||    
T  30324477 cagacaccccacttattcaccttagaaggtgaattctagccactaggctacctgaccaaaaaaaaa 30324542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 3465647 - 3465711
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaag 83  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| |||| || || || |||||||    
T  3465647 gacaccccacttattcaccttataaggtgaattctagccactagactacctcacaaaaaaaaaag 3465711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 12820436 - 12820384
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||||||||    
T  12820436 gacaccccacttattcaccttataaggtgaattctagccactaggctatctga 12820384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 32885752 - 32885795
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaa 62  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||    
T  32885752 gacaccccacttattcaccttataaggtgaattctatccactaa 32885795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 53291506 - 53291569
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||| | ||||||||||| ||||||||||||||  |||||| ||| |||||||| ||||||    
T  53291506 gacacccaacttattcaccttataaggtgaattctatgcactaagctacctgaccaaaaaaaaa 53291569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 36008340 - 36008382
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaa 62  Q
    |||||||| ||||||||||| |||||||||||||| |||||||    
T  36008340 acaccccacttattcaccttataaggtgaattctagccactaa 36008382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 39992899 - 39992941
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  39992899 gacaccccacttattcaccttataaggtgaattctagccacta 39992941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 43606133 - 43606087
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaa 63  Q
    |||||||||||||||| || ||| |||| ||||||||||||||||||    
T  43606133 cagacaccccatttatccatcttataagatgaattctaaccactaaa 43606087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 48512263 - 48512317
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgacc 73  Q
    ||||||||| ||||||||||| ||||||||||| || |||||| ||||| |||||    
T  48512263 gacaccccacttattcaccttataaggtgaattttagccactagactatttgacc 48512317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 49280700 - 49280658
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||| || ||||||||||| |||||||||||||||||||||    
T  49280700 gacacctcacttattcaccttataaggtgaattctaaccacta 49280658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 9285692 - 9285643
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||||| ||||| ||||| |||||||||||||| |||||| ||||    
T  9285692 cagacaccccacttattaaccttataaggtgaattctagccactagacta 9285643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 15638750 - 15638791
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccact 60  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||    
T  15638750 gacaccctatttattcatcttataaggtgaattctaaccact 15638791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 44374110 - 44374057
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||| | ||| ||||||||||||||  ||||||||||||||||    
T  44374110 gacaccccacttatttatcttataaggtgaattctagtcactaaactatctgac 44374057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 52560838 - 52560891
Alignment:
Q  29 ttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| |||||||||||||| |||||| |||| ||||| || ||||||    
T  52560838 ttattcaccttataaggtgaattctagccactagactacctgacaaaaaaaaaa 52560891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 7086318 - 7086382
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaaga 84  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||| ||||| || ||||||||    
T  7086318 acaccccaattattcaccttataaggtgaattctaaccactagactacctgacaaaaaaaaaaga 7086382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 34018101 - 34018045
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaa 75  Q
    ||||||||| ||||||||||| |||||||||||||||||||||  ||| ||||||||    
T  34018101 gacaccccacttattcaccttataaggtgaattctaaccactaggctacctgaccaa 34018045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 45523740 - 45523792
Alignment:
Q  30 tattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||||||| |||||||||||||||||||||||||| ||||| || ||||||    
T  45523740 tattcaccttataaggtgaattctaaccactaaactacctgacaaaaaaaaaa 45523792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 38820636 - 38820691
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||||| |||||    
T  38820636 cagacaccccatttattcatcttataaggtgaattctagccattaaactacctgac 38820691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 44721735 - 44721673
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||||||||||||| |||||||||||||| ||||||   ||||||| ||||||||||    
T  44721735 gacaccccatttattcaccttataaggtgaattctagccactaggttatctga-caataaaaaa 44721673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 3179386 - 3179430
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  3179386 cagacaccccacttattcaccttataaggtgaattctagccacta 3179430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 14483688 - 14483632
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaa 75  Q
    ||||||||| ||||||| ||| |||||||||||||||||| || |||| ||||||||    
T  14483688 gacaccccacttattcatcttataaggtgaattctaaccaatagactacctgaccaa 14483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 580814 - 580751
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||| ||||||||| ||||||  ||| |||||||| ||||||    
T  580814 gacaccccacttattcaccttataagatgaattctagccactaggctacctgaccaaaaaaaaa 580751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3364788 - 3364831
Alignment:
Q  18 agacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||    
T  3364788 agacaccccacttattcatcttttaaggtgaattctagccacta 3364831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 16028141 - 16028074
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaaga 84  Q
    |||||| |||| |||||||| || |||||||||||||| |||| | |||||||||| || ||||||||    
T  16028141 cagacatcccacttattcactttataaggtgaattctagccaccagactatctgacaaaaaaaaaaga 16028074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 16973972 - 16974019
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||| ||||| ||||| |||||||||||||| |||||||||||    
T  16973972 gacaccccacttatttaccttataaggtgaattctacccactaaacta 16974019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 22297483 - 22297436
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  22297483 gacaccccatttattcaccttataatgttaattctagccactaaacta 22297436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 30471996 - 30471937
Alignment:
Q  25 ccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaaga 84  Q
    |||||||||||| || |||||||||||||| ||||||||||| || || || ||||||||    
T  30471996 ccatttattcactttataaggtgaattctagccactaaactacctaactaaaaaaaaaga 30471937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 30474228 - 30474185
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccact 60  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  30474228 cagacaccccacttattcaccttataaggtgaattctagccact 30474185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 8234823 - 8234781
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  8234823 gacaccccacttattcaccttataaggtgaattctagccacta 8234781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 11133140 - 11133182
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  11133140 gacaccccacttattcaccttataaggtgaattctagccacta 11133182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 17154713 - 17154775
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||||| ||||| ||||||  ||| |||||||| |||||    
T  17154713 gacaccccacttattcaccttataaggtgagttctagccactaggctacctgaccaaaaaaaa 17154775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29664667 - 29664729
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||| ||| |||||||||||||| |||||| |||| ||||| || |||||    
T  29664667 gacaccccacttattcatcttataaggtgaattctagccactagactacctgacaaaaaaaaa 29664729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 2114466 - 2114425
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccact 60  Q
    |||||| |||||||||||||| |||||||||||||| |||||    
T  2114466 gacacctcatttattcaccttataaggtgaattctagccact 2114425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 34620580 - 34620629
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaacta 66  Q
    ||||||| | ||||||||||||| |||||||||||||| |||||| ||||    
T  34620580 cagacactctatttattcaccttataaggtgaattctagccactagacta 34620629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30403814 - 30403867
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||    
T  30403814 gacaccccacttattcaccttataaggtgaattctaaccactaagctacctgac 30403867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 29144204 - 29144248
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  29144204 cagacaccccatttattcacgttataaggtgaattctaaccacta 29144248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 33729840 - 33729884
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  33729840 cagacaccccacttattcaccttataaggtgaattctaaccacta 33729884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 2029158 - 2029095
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaag 83  Q
    |||||||| ||||||||||| |||||||||||||| ||||||  ||||||||| || |||||||    
T  2029158 acaccccacttattcaccttataaggtgaattctagccactaggctatctgacaaaaaaaaaag 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 39429073 - 39429131
Alignment:
Q  211 tattcttaaaacaatattcttaaaattaaaaatat--gcatcataatcattaatttatc 267  Q
    ||||||||||| |||||||||||||||||||||||    ||||||||||||||||||||    
T  39429073 tattcttaaaaaaatattcttaaaattaaaaatatagtaatcataatcattaatttatc 39429131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 20945922 - 20945860
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| | || |||||||| |||||    
T  20945922 gacaccccacttattcaccttataaggtgaattctagccactagattacctgaccaaaaaaaa 20945860  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 1244760 - 1244716
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  1244760 cagacaccccacttattcaccttataaggtgaattctagccacta 1244716  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 5156960 - 5157024
Alignment:
Q  18 agacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||||| | ||||||||||| |||||||||||||| |||||| |||| ||||| || ||||||    
T  5156960 agacaccctacttattcaccttataaggtgaattctagccactagactacctgacaaaaaaaaaa 5157024  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7234905 - 7234861
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||    
T  7234905 cagataccccatttattcaccttataaggtgaattctagccacta 7234861  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 9408981 - 9408929
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    |||||| |||||||||| ||| |||| ||||||||||||||||||||| ||||    
T  9408981 gacacctcatttattcaacttataagatgaattctaaccactaaactacctga 9408929  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 9577360 - 9577420
Alignment:
Q  22 accccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||| ||||||||||| |||||||||||||| ||||||  ||| |||||||| ||||||    
T  9577360 accccacttattcaccttataaggtgaattctagccactaggctacctgaccaaaaaaaaa 9577420  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 42070502 - 42070442
Alignment:
Q  21 caccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaa 81  Q
    |||| ||||||||||| || |||||||||||||| |||||| |||||||||| || |||||    
T  42070502 cacctcatttattcactttataaggtgaattctagccactagactatctgacaaaaaaaaa 42070442  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 43166734 - 43166786
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||||| ||||||||||| |||||||||||||| ||||||  |||||||||    
T  43166734 acaccccacttattcaccttataaggtgaattctagccactaggctatctgac 43166786  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 4216848 - 4216809
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaac 56  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  4216848 cagacaccccacttattcaccttataaggtgaattctaac 4216809  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 12238849 - 12238794
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    |||||||| |||||||| | ||| ||||||||||| || |||||||||||||||||    
T  12238849 cagacacctcatttatttatcttataaggtgaattttagccactaaactatctgac 12238794  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 29096339 - 29096276
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||  ||| ||||| || ||||||    
T  29096339 gacaccccacttattcaccttataaggtgaattctagccactaggctacctgacaaaaaaaaaa 29096276  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 8015899 - 8015941
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  8015899 gacaccccacttattcaccttataaggtgaattctacccacta 8015941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 19059035 - 19058993
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  19059035 gacaccccacttattcaccttataaggtgaattctagccacta 19058993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 32158444 - 32158382
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    |||||||| ||||||||||| |||||||||||||| ||||||  ||| ||||| || ||||||    
T  32158444 acaccccacttattcaccttataaggtgaattctagccactaggctacctgacaaaaaaaaaa 32158382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 40339131 - 40339089
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||    
T  40339131 gacacccaatttattcaccttataaggtgaattctagccacta 40339089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 6561963 - 6562004
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  6561963 acaccccacatattcaccttataaggtgaattctaaccacta 6562004  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 13754070 - 13754107
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaac 56  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  13754070 gacaccccatttattcatcttataaggtgaattctaac 13754107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 15978707 - 15978666
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccacta 61  Q
    |||||||| ||||||||||| ||||||||||| |||||||||    
T  15978707 acaccccacttattcaccttataaggtgaattttaaccacta 15978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 22872839 - 22872786
Alignment:
Q  29 ttattcaccttttaaggtgaattctaaccactaaactatctgaccaataaaaaa 82  Q
    ||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||||    
T  22872839 ttattcaccttataagatgaattctagccactaaactgcctgaccaaaaaaaaa 22872786  T

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Target: scaffold1990 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1990
Description:

Target: scaffold1990; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 956 - 1012
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgacc 73  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||| | |||||||||    
T  956 cagacaccccacttattcaccttataaggtgaattctagccactagaatatctgacc 1012  T

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Target: scaffold0092 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 47350 - 47294
Alignment:
Q  17 cagacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgacc 73  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||| | |||||||||    
T  47350 cagacaccccacttattcaccttataaggtgaattctagccactagaatatctgacc 47294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 8625 - 8676
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctga 71  Q
    |||||| | ||||||||||| ||| ||||||||||||||||||| |||||||    
T  8625 acaccctacttattcaccttataatgtgaattctaaccactaaattatctga 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2552 - 2605
Alignment:
Q  19 gacaccccatttattcaccttttaaggtgaattctaaccactaaactatctgac 72  Q
    ||||||||| ||||||||||| |||||||||||| | |||||| |||| |||||    
T  2552 gacaccccacttattcaccttataaggtgaattccagccactagactacctgac 2605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 49885 - 49938
Alignment:
Q  20 acaccccatttattcaccttttaaggtgaattctaaccactaaactatctgacc 73  Q
    |||||||| ||||||| ||| |||||||||||||| |||||| |||| ||||||    
T  49885 acaccccacttattcaacttataaggtgaattctagccactagactacctgacc 49938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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