View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_3 (Length: 574)
Name: NF14124_low_3
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 206 - 549
Target Start/End: Complemental strand, 14143759 - 14143420
Alignment:
| Q |
206 |
aatatcattgataatgatgacgcggaaaacaatcttcttgaagaattagagaaagatgatcacattgaggcaccatttcaagtggtgcagtcaaagaaga |
305 |
Q |
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| T |
14143759 |
aatatcattgataatgatgacgcggaaaacaatcttcttgaagaattagagaaagatgatcacattgaggcaccatttcaagtggtgcagtcaaagaaga |
14143660 |
T |
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| Q |
306 |
aagcaaaaaaccagaaaaataatacaagtaagagttcttattcaaccagatccaaggctggtacttctaaaccttttagatgaaaattttatattggaat |
405 |
Q |
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| T |
14143659 |
aagcaaaaaaccagaaaaataatacaagtaagagttcttattcaaccagatccaaggctggtacttctaaaccttttagatgaaaattttatattggaat |
14143560 |
T |
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| Q |
406 |
attagaggtttggccaacactccatccagattggctcttaaaaaattaattatgcaagaacaccctgatttcattattatagctgaaccatgcatggatc |
505 |
Q |
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| T |
14143559 |
attagaggtttggccaacactccatccagattggctcttaaaaaattaattatgcaagaacaccctgatttcgttattatagctgaac----catggatc |
14143464 |
T |
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| Q |
506 |
cattttgataagtttccaagaaggtggcttataagattgggtct |
549 |
Q |
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| T |
14143463 |
cattttgataagtttcctagaaggtggcttataagattgggtct |
14143420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 14144197 - 14144020
Alignment:
| Q |
16 |
caacatggtggggcattatctggaaatttgcaggaaagttaataatgttgatgatgaaggtcccagcaaggaggatagaaacaagaataagcaaaagaag |
115 |
Q |
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| T |
14144197 |
caacatggtggggcattatctggaaatttgcaggaaagttaataatgttgatgatgaaggtcccagcaaggaggatagaaacaagaataagcaaaagaag |
14144098 |
T |
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| Q |
116 |
gtttatgttcagaccagggacggtaatttggagcagggaaagaagaatcaagcgactggaattgttattaaagagaatcagggtactggtaatatca |
212 |
Q |
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| T |
14144097 |
gtttatgttcagacca-------------------gggaaagaagaatcaagcgactggaattgttattaaagagaatcagggcactggtaatatca |
14144020 |
T |
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