View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_5 (Length: 552)
Name: NF14124_low_5
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 24478950 - 24479485
Alignment:
| Q |
1 |
ggaataacgggtcttagaagataattacaactagcagttaaaaaattgttgactgagcaaacaagttccatgtcttcctcagttgagcttaacggaagtg |
100 |
Q |
| |
|
||||||| |||||| ||| || |||||| ||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24478950 |
ggaataataggtcttggaatatgattacatctagcagttaaaaaattgtcgaatgatcgaacaagttccatgtcttcctcagttgagcttaacggaagtg |
24479049 |
T |
|
| Q |
101 |
agatcttaccgccggtaagatctctatcatccactgactgcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttggttggtaagga |
200 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479050 |
aggtcttaccaccggtaagatctctatcatccactgacttcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttggttggtaagga |
24479149 |
T |
|
| Q |
201 |
gaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcactcagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479150 |
gaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcactcagg |
24479249 |
T |
|
| Q |
301 |
tgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttgcttcttgtgaaaataaactcctctgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24479250 |
tgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttgcttcttgtgaaaataaactcctctgtg |
24479349 |
T |
|
| Q |
401 |
tttgatctatggccttttcactaccatatttttctctacttatgagtttaaaactagtagtgaatagactgtcatatatataacgatcaaatttcctctt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24479350 |
tttgatctatggccttttcactaccatatttttctctacttatgagtttaaaactagtagtgaatagactgtcatatatataacgatcaaatttcctctt |
24479449 |
T |
|
| Q |
501 |
ctgaaataaaaaattgactctattataaataaaact |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
24479450 |
ctgaaataaaaaattgactctattataaataaaact |
24479485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 24694146 - 24693804
Alignment:
| Q |
1 |
ggaataacgggtcttagaagataattacaactagcagttaaaaaattgttgactgagcaaacaagttccatgtcttc---ctcagttgagcttaacggaa |
97 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||| |
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|
| T |
24694146 |
ggaataacgggtcttagtagatgattacacctaggagttaaaaaattgttgagtgagcaaacaagttccatgtcttcttcctcagttgaacttaactgaa |
24694047 |
T |
|
| Q |
98 |
gtgagatcttaccgccggtaagatctctatcatccactgactgcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttggttggtaa |
197 |
Q |
| |
|
||||| ||||||| | |||| || | ||||| ||| ||||| ||||||||| ||||||| ||| ||||||||||| |||||||||| |||||| || |
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| T |
24694046 |
gtgaggtcttaccatcagtaaaatatttatcacccattgacttcaatgctttcacaaagtatatatttggtttatcatttaatgatggtttggtactgaa |
24693947 |
T |
|
| Q |
198 |
ggagaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcactc |
297 |
Q |
| |
|
||||||||||| || ||| ||| ||||||| ||||| ||| |||||||||||||| | | |||| | |||| |||||||||||||||| ||||||||| |
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| T |
24693946 |
ggagaaactattaccaaccattaaatctctaggttggttttccaagctcccttgatgcatagggtaactcaaaaccttaatagaatcttcagattcactc |
24693847 |
T |
|
| Q |
298 |
aggtgagaatagtcttctgtacaagtagcacaatattctcctt |
340 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
24693846 |
aggtgagaatagtcttctgtacaggtttcacaatattctcctt |
24693804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 272 - 513
Target Start/End: Complemental strand, 24693698 - 24693457
Alignment:
| Q |
272 |
ccttaatagaatctttggattcactcaggtgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatt |
371 |
Q |
| |
|
||||||||||||| |||| |||| | || |||| | ||||| ||||| || |||||| ||||||||||||||||||||||| |||||||| ||| || |
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|
| T |
24693698 |
ccttaatagaatcattggggtcacataagtaagaacaatcttccatacaaataccacaatgttctccttcatcatctagagtagcaaaaataaactcctt |
24693599 |
T |
|
| Q |
372 |
tgcttcttgtgaaaataaactcctctgtgtttgatctatggccttttcactaccatatttttctctacttatgagtttaaaactagtagtgaatagactg |
471 |
Q |
| |
|
|||| |||||||||||||| | | || | |||||| || |||||| |||||||||||||||| || || |||||| ||||||||||||||| || | |
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| T |
24693598 |
tgctcgttgtgaaaataaacacttttgcgcctgatctctgacctttttactaccatatttttctttatctaagagttttaaactagtagtgaatgtaccg |
24693499 |
T |
|
| Q |
472 |
tcatatatataacgatcaaatttcctcttctgaaataaaaaa |
513 |
Q |
| |
|
|| |||||||| || || |||||||||||||||||||||||| |
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|
| T |
24693498 |
tcgtatatataccggtccaatttcctcttctgaaataaaaaa |
24693457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 41369460 - 41369821
Alignment:
| Q |
1 |
ggaataacgggtcttagaagataattacaactagcagttaaaaaattgttgactgagcaaacaagttccatgtcttcctcagttgagcttaacggaagtg |
100 |
Q |
| |
|
||||||| |||||| |||||| |||| || |||| ||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
41369460 |
ggaataattggtcttggaagatgattatccctggcaggtaaaaaattgttgcgtgagcgaacaagatccatgtcttcctcagttgaacttaacggaagtg |
41369559 |
T |
|
| Q |
101 |
agatcttaccgccggtaagatctctatcatccactgactgcaatgcttttacaaagtctatttttggtttatcttttaatgatgatttggttggtaagga |
200 |
Q |
| |
|
|| | | ||| |||||||||||||||||||| | | | ||||||| |||||||| |||||| ||||||| |||||||||| | |||| | |||| |
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|
| T |
41369560 |
aggtttcaccattggtaagatctctatcatccattaagtttaatgcttccacaaagtcaattttttgtttatcatttaatgatggtatggtgcctgagga |
41369659 |
T |
|
| Q |
201 |
gaaactatcactaactattttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcactcagg |
300 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||| | | ||||||||||||||||| ||||| |||||| |
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|
| T |
41369660 |
gaaactatcactaaccattaaatctctatgttgaattttcaagctcccttgatacaaagggtaacttggcaccttaatagaatcttccgattcgctcagg |
41369759 |
T |
|
| Q |
301 |
tgagaatagtcttctgtacaagtagcacaatattctccttcatcatctagagtaggaaaaat |
362 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||| ||| | || ||||| ||||||||| |
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|
| T |
41369760 |
tgagaatagtcttccatacaggtagcgcaatattcttctttgttatttagagcaggaaaaat |
41369821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 41369851 - 41370033
Alignment:
| Q |
218 |
ttttatctctatgttggattttcaagctcccttgatacttggggttattcaacaccttaatagaatctttggattcactcaggtgagaatagtcttctgt |
317 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| | |||||| | | || |||||| |||||| |||| | ||| |||| |||| ||||||| | |
|
|
| T |
41369851 |
ttttatctctagcttggattttcatgctcctttgattcatggggtaacttgaccccttaacagaatcattggggtaactgaggtaagaacagtcttccat |
41369950 |
T |
|
| Q |
318 |
acaagtagcacaatattctccttcatcatctagagtaggaaaaataatctcatttgcttcttgtgaaaataaactcctctgtg |
400 |
Q |
| |
|
|||| || |||| |||||| |||| | |||||||||||||| ||||| ||| |||| | ||||| ||||||||||||| |||| |
|
|
| T |
41369951 |
acaaataccacagtattctacttcgttatctagagtaggaagaataaactcctttgttccttgtaaaaataaactcctttgtg |
41370033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 536
Target Start/End: Original strand, 41370051 - 41370100
Alignment:
| Q |
487 |
tcaaatttcctcttctgaaataaaaaattgactctattataaataaaact |
536 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||| || |||||| |
|
|
| T |
41370051 |
tcaaatttccttttctgaaattaaaatttgactctattattaacaaaact |
41370100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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