View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14124_low_6 (Length: 527)
Name: NF14124_low_6
Description: NF14124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14124_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 232 - 520
Target Start/End: Original strand, 25117846 - 25118133
Alignment:
| Q |
232 |
agaagtacataatatcctaaagatgagaacgggaaattgttctttgcaacaaggcctaaccacagaagcagcaaacataataaagcaagcaataacccta |
331 |
Q |
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| T |
25117846 |
agaagtacataat-tcctaaagatgagaacgggaaactgttctttgcaacaaggcctaacaacagaagctgcaaacataataaagcaagcaataacccta |
25117944 |
T |
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| Q |
332 |
gcaaagcgtcgtggccatgctcaagtaacaccacttcatgttgcaaacactatgcttagtgttaccaatggattattaagaacagcttgtcttcaatctc |
431 |
Q |
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| T |
25117945 |
gcaaagcgtcgtggccatgctcaagtaacaccacttcatgttgcaaatacgatgcttagtgttaccaatggattattaagaacagcttgtcttcaatctc |
25118044 |
T |
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| Q |
432 |
actctcaccctcttcaatgcaaggctttagagctttgcttcaatgtcgcactcaatcgtttgccagcgacgacttgtaatagccctatg |
520 |
Q |
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| T |
25118045 |
actctcaccctcttcaatgcaaggctttagagctttgcttcaatgtcgcactcaatcgtttgccagcgacgacttgtaatagccctatg |
25118133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 25117618 - 25117768
Alignment:
| Q |
19 |
ttatatattataccaacaaaacactttgttttttcatcaccctaagtttcctacctcttagtcttctccatatatcatccttctcttaatccaaatgaat |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25117618 |
ttatatattataccaacaaaacactttgtttcttcatcaccctaagtttcctacctcttagtcttctccatatatcatccttctctcaatccaaatgaat |
25117717 |
T |
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| Q |
119 |
acca-ccttaacccttgaaagttcaaactcactcactcttaatttctagct |
168 |
Q |
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| T |
25117718 |
accacccttaacccttgaaagttcaaactcactcactcttaatttctagct |
25117768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 40588860 - 40588775
Alignment:
| Q |
407 |
ttaagaacagcttgtcttcaatctcactctcaccctcttcaatgcaaggctttagagctttgcttcaatgtcgcactcaatcgttt |
492 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||| ||||| |
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| T |
40588860 |
ttaagaaaagcttgtcttcaatgtcactctcaccctcttcaatgcaaagctcttgagctttgtttcaatgttgcactcaaccgttt |
40588775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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