View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14125_high_3 (Length: 269)
Name: NF14125_high_3
Description: NF14125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14125_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 42031597 - 42031851
Alignment:
| Q |
1 |
tagctgaacatattgaacaaactcatttatttatattcagattaagctattgtttaatacaggactaattaatttatacannnnnnnnactatttagaaa |
100 |
Q |
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| T |
42031597 |
tagctgaacatattgaacaaactcatttatttatattcagattaagctattgtttagtacaggactaattaatttatacattttttttactatttagaaa |
42031696 |
T |
|
| Q |
101 |
attccaattgtaaaggctgatcggagacctggagatgctgaagttgtttatgcatcaacagaaaaagcagcaaaagaacttaactggaagtaagtgtgga |
200 |
Q |
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| T |
42031697 |
attccaattgtaaaggctgatcggagacctggagatgctgaagttgtttatgcatcaacagaaaaagcagcaaaagaacttaactggaagtaagtgtgga |
42031796 |
T |
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| Q |
201 |
ttttctcaagcgaatgctttgtgatatttagttgtgcttaaagctctcctctctg |
255 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42031797 |
ttttctcaagcgaatgctttgtgatatttagttgttcttaaagctctcctctctg |
42031851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 2126101 - 2126002
Alignment:
| Q |
96 |
agaaaattccaattgtaaaggctgatcggagacctggagatgctgaagttgtttatgcatcaacagaaaaagcagcaaaagaacttaactggaagtaagt |
195 |
Q |
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||||||||||| |||| ||||||| ||| |||||||| ||||||||| ||||||||||||| ||||||||||| | || ||||||||| ||||||||||| |
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| T |
2126101 |
agaaaattccacttgtgaaggctggtcgtagacctggtgatgctgaaattgtttatgcatccacagaaaaagctgaaagagaacttaagtggaagtaagt |
2126002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 2130719 - 2130618
Alignment:
| Q |
96 |
agaaaattccaattgtaaaggctgatcggagacctggagatgctgaagttgtttatgcatcaacagaaaaagcagcaaaagaacttaactggaagtaagt |
195 |
Q |
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||||||||||| |||| ||||||| || |||||||| ||||||||| ||||||||||||||||| ||||||| | || ||||||||| ||||||||||| |
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| T |
2130719 |
agaaaattccacttgtgaaggctggccgtagacctggtgatgctgaaattgtttatgcatcaacaaaaaaagctgaaagagaacttaagtggaagtaagt |
2130620 |
T |
|
| Q |
196 |
gt |
197 |
Q |
| |
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|| |
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|
| T |
2130619 |
gt |
2130618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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