View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14125_high_5 (Length: 243)
Name: NF14125_high_5
Description: NF14125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14125_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42031468 - 42031244
Alignment:
| Q |
1 |
tgaccttgttagatatcccataatatttaaaaaatcatctatcttagggccaaagtgaaagatttttatagtttacttacaactgacgtaatggaaataa |
100 |
Q |
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| T |
42031468 |
tgaccttgttagatatcccataatatttaaaaaatcatctatcttagggccaaagtgaaagagttttttagtttacttacaactgacgtaatggaaataa |
42031369 |
T |
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| Q |
101 |
gtgaacacagcttaaagagatgccataaatgattatcttaacactaaggcaagtccttatgctatatcaacttaaagagaccatcaaatgacatttataa |
200 |
Q |
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| T |
42031368 |
gtgaacacaacttaaagagatgccataaatgattatcttaacactaaggcaagtccttatgctatatcaacttaaagagaccatcaaatgacatttataa |
42031269 |
T |
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| Q |
201 |
aatggttataagaatgagagtaagg |
225 |
Q |
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| T |
42031268 |
aatggttataagaatgagagtaagg |
42031244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 41807206 - 41807355
Alignment:
| Q |
1 |
tgaccttgttagatatcccataatatttaaaa----aatcatctatcttaggg--ccaaagtgaaagatttttatagtttacttacaactgacgtaatgg |
94 |
Q |
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|||| ||||| |||||||||||||||| |||| || ||| ||||||| || |||||||||||||| |||| || ||| ||| || |||||||||| |
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| T |
41807206 |
tgactttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaagatatttacagcttaattagaatagacgtaatgg |
41807305 |
T |
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| Q |
95 |
aaataa-gtgaacacagcttaaagagatgccataaatgattatcttaaca |
143 |
Q |
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|||||| |||||||| ||||||||||| ||||| | ||||||| |||| |
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| T |
41807306 |
aaataatttgaacacaacttaaagagatagcataatttattatctaaaca |
41807355 |
T |
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