View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14125_low_1 (Length: 689)
Name: NF14125_low_1
Description: NF14125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14125_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Original strand, 17237824 - 17238264
Alignment:
| Q |
6 |
agtgaaaagaattaaggagtagacatcttgaataaacataatcaaaatgtattaaaagagaacattatatattacatggtttaaaaatttccctagagat |
105 |
Q |
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| T |
17237824 |
agtgaaaagcattaaggactagacatcttgaataaacataatcaaaatgtattaaaagagaacattatagattacatggtttaaaaaattccatagagat |
17237923 |
T |
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| Q |
106 |
tcatcattcaaccataatataaaagagcttagttattgatggtaataatagacaaattcaaagagaatgaaaattattcatgcaaaaatgaagaccacgg |
205 |
Q |
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| T |
17237924 |
tcatcattcaaccataatataaaagagcttggttattgatggtaataatagacagattcaaatagaatgaaaattatacatgcaaaaatgaagaccacgg |
17238023 |
T |
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| Q |
206 |
gatttcgtacata-ttttcccatagttgtatgaactttattatcttcattgtgattgatcttttatttttcgataatttctatgacatgtcttttgagcg |
304 |
Q |
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| T |
17238024 |
gatttcatacatatttttcccatagttgtatgaactttatcatcttcattgtgattgatc-tttatgtttcggtaatttctatgacatgtcttttgagcg |
17238122 |
T |
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| Q |
305 |
gatcaatccaatgatctataccaaaaagactacgacaaacctataaagttgtttggttaaaaaattacaagattcacaatgattcaattcaaaacattat |
404 |
Q |
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| T |
17238123 |
gatcaatccaatgatctatactaaaaagactacgacaaacctataaagttgtttggttagaaaattacaagattcacaatgattcaattcaaaacattac |
17238222 |
T |
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| Q |
405 |
atattctttactaaattaccagtaattcactctaaaccgtct |
446 |
Q |
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| T |
17238223 |
atattctttactaaattatcagtaactcactctaaaccgtct |
17238264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 611 - 675
Target Start/End: Original strand, 17238351 - 17238415
Alignment:
| Q |
611 |
agaggttacactgcatcactttttcatcttcttctttttgagctaagattgcatcaatgatatct |
675 |
Q |
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| T |
17238351 |
agaggttacactgcatcactttttcatcttcttctttttgagttaagattgcatcaatgatatct |
17238415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 17238294 - 17238350
Alignment:
| Q |
476 |
cactcgatcaaacactaaaatccatgctatggtggaaagtcattagtttttccctta |
532 |
Q |
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| T |
17238294 |
cactcgatcaaacactaaaattcatgctatggtggaaagtcattagttttttcctta |
17238350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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