View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14125_low_2 (Length: 404)
Name: NF14125_low_2
Description: NF14125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14125_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 3427967 - 3428354
Alignment:
| Q |
17 |
aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacaccttccaggtaagtatgttgcaatgtgtcacacacttctattttataac |
116 |
Q |
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| T |
3427967 |
aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacacctgccaggtaagtatgctgcaatgtgtcacacacttctattttataac |
3428066 |
T |
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| Q |
117 |
tcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaaacaccattcaagtgtcagcagttcataccctagctcaca |
216 |
Q |
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| T |
3428067 |
tcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaaacaccattcaagtgtcagcagttcataccctagctcaca |
3428166 |
T |
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| Q |
217 |
catttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa |
316 |
Q |
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| T |
3428167 |
catttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa |
3428266 |
T |
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| Q |
317 |
aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaacca |
404 |
Q |
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| T |
3428267 |
aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaacca |
3428354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 9211459 - 9211606
Alignment:
| Q |
19 |
gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat |
113 |
Q |
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| T |
9211459 |
gtgcaatgaaggtcacttgcctaggccatgggccttcctgatcacccattgaccccatccaggtaagtatgttacaatgtatcacacaattctgttttat |
9211558 |
T |
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| Q |
114 |
aactcatgctccacattattcactacaaatcttccgatgtgggactta |
161 |
Q |
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| T |
9211559 |
aactcatgctccataacattcactataaaacttccgatgtgggactta |
9211606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 9370026 - 9369879
Alignment:
| Q |
19 |
gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat |
113 |
Q |
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| T |
9370026 |
gtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagtatgttgcaatgaatcacacaattctcttttat |
9369927 |
T |
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| Q |
114 |
aactcatgctccacattattcactacaaatcttccgatgtgggactta |
161 |
Q |
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| T |
9369926 |
aactcatgctccataacattcactataaaacttccgatgtgggactta |
9369879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 12560198 - 12560154
Alignment:
| Q |
19 |
gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac |
63 |
Q |
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| T |
12560198 |
gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac |
12560154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 19242464 - 19242508
Alignment:
| Q |
19 |
gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac |
63 |
Q |
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| T |
19242464 |
gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac |
19242508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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