View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14125_low_3 (Length: 372)

Name: NF14125_low_3
Description: NF14125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14125_low_3
NF14125_low_3
[»] chr6 (50 HSPs)
chr6 (1-356)||(31287325-31287681)
chr6 (211-315)||(27674846-27674950)
chr6 (210-322)||(26886889-26887001)
chr6 (1-317)||(27681742-27682051)
chr6 (210-322)||(27590397-27590509)
chr6 (210-321)||(27695862-27695973)
chr6 (1-128)||(26887762-26887886)
chr6 (1-124)||(27590195-27590315)
chr6 (190-321)||(28795190-28795322)
chr6 (211-315)||(26649263-26649367)
chr6 (211-315)||(26755231-26755335)
chr6 (183-321)||(28789166-28789305)
chr6 (201-322)||(25513655-25513776)
chr6 (210-315)||(26805288-26805393)
chr6 (1-128)||(27715566-27715690)
chr6 (1-127)||(26638375-26638501)
chr6 (1-127)||(26744341-26744467)
chr6 (211-317)||(27608392-27608498)
chr6 (201-314)||(26145785-26145898)
chr6 (144-321)||(26961892-26962071)
chr6 (201-321)||(25485771-25485891)
chr6 (201-313)||(25547769-25547881)
chr6 (210-321)||(27601994-27602105)
chr6 (1-127)||(26626100-26626226)
chr6 (1-127)||(26732077-26732203)
chr6 (210-317)||(27662643-27662750)
chr6 (201-259)||(25491403-25491461)
chr6 (1-128)||(27608176-27608303)
chr6 (201-314)||(25582495-25582608)
chr6 (201-314)||(26058707-26058820)
chr6 (201-314)||(26078677-26078790)
chr6 (1-84)||(26805536-26805616)
chr6 (2-85)||(26952618-26952698)
chr6 (1-124)||(27674624-27674744)
chr6 (281-317)||(26625917-26625953)
chr6 (281-317)||(26731894-26731930)
chr6 (1-127)||(26876531-26876654)
chr6 (204-254)||(26851358-26851408)
chr6 (211-317)||(27715772-27715878)
chr6 (280-321)||(26980190-26980231)
chr6 (1-68)||(28789396-28789460)
chr6 (210-321)||(26638183-26638294)
chr6 (1-127)||(26658946-26659069)
chr6 (210-321)||(26744149-26744260)
chr6 (1-127)||(26764917-26765040)
chr6 (1-74)||(26851552-26851622)
chr6 (210-313)||(26876363-26876466)
chr6 (7-74)||(27662444-27662511)
chr6 (5-124)||(27695640-27695759)
chr6 (281-313)||(26851299-26851331)
[»] chr1 (4 HSPs)
chr1 (210-321)||(265602-265713)
chr1 (1-128)||(265391-265515)
chr1 (284-321)||(28124969-28125006)
chr1 (284-322)||(28130000-28130038)
[»] chr8 (2 HSPs)
chr8 (210-321)||(22024057-22024168)
chr8 (211-315)||(29271111-29271215)
[»] scaffold0277 (4 HSPs)
scaffold0277 (183-321)||(1931-2070)
scaffold0277 (183-321)||(10894-11033)
scaffold0277 (1-68)||(1773-1837)
scaffold0277 (1-68)||(10739-10803)
[»] scaffold0419 (2 HSPs)
scaffold0419 (190-321)||(10316-10448)
scaffold0419 (1-68)||(10546-10610)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-128)||(16255-16379)
scaffold0349 (211-317)||(16067-16173)
[»] chr4 (8 HSPs)
chr4 (1-127)||(18696516-18696639)
chr4 (210-313)||(18686925-18687028)
chr4 (210-313)||(18696719-18696822)
chr4 (210-254)||(18652794-18652838)
chr4 (210-254)||(18676876-18676920)
chr4 (210-254)||(18721390-18721434)
chr4 (192-254)||(18728793-18728856)
chr4 (60-127)||(18686778-18686845)
[»] chr2 (2 HSPs)
chr2 (1-122)||(17990202-17990320)
chr2 (210-313)||(17990418-17990521)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 50)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 31287681 - 31287325
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31287681 ttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 31287582  T
Q  101 cagcctcatgtactttctgttagtttatnnnnnnngaatgataattacactatgaattatatacatgaaatattatgtatcaaataatatatattgcaag 200  Q
    |||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31287581 cagcctcatgtagtttctgttagtttataaaaaaagaatgataattacactatgaattatatacatgaaatattatgtatcaaataatatctattgcaag 31287482  T
Q  201 aaaaat-aataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctc 299  Q
    |||||  || ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  31287481 aaaaaacaacaaacctgactcgttaacattcttctacttgaggaactcaacgattcacatttataagcggaaagctcttcaagatttggtggaatccctc 31287382  T
Q  300 taatttcctcaagagacttgcaacaatcgaattcaaagatcttcataaggtgacatt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31287381 taatttcctcaagagacttgcaacaatcgaattcaaagatcttcataaggtgacatt 31287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 27674846 - 27674950
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    |||||||||||||||||||||||||| |||||| ||||||||||  |||| ||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  27674846 aacctgactcattaacattcttctacatgaggaactcaatgatttacattgatatgcggaaagctctttaagatttggtggaatccctctaatttcctca 27674945  T
Q  311 agaga 315  Q
    |||||    
T  27674946 agaga 27674950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 210 - 322
Target Start/End: Complemental strand, 26887001 - 26886889
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||||||| ||||||||||||||||||||| |||||||| | ||||||   ||| ||||| |||| |||||||||||| |||||||||||||||||    
T  26887001 aaacctgactcaataacattcttctacttgaggaactcaatgaatggcattttatagcagaaaggtctttaagatttggtggtatccctctaatttcctc 26886902  T
Q  310 aagagacttgcaa 322  Q
    |||||||||||||    
T  26886901 aagagacttgcaa 26886889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 27682051 - 27681742
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||| ||    |||||| | |||||||||||||||||| ||| ||||| ||| ||||||||||||||||||  |  |||| ||    
T  27682051 ttacgaaaccagaaagaaattatgg---gtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttgggaaataaatcttggtgcatc 27681955  T
Q  101 cagcctcatgtactttctgttagtttatnnnnnnngaatgataattacactatgaattatatacatgaaatattatgtatcaaataat---atatattgc 197  Q
    | |||||||||| |||||||| ||||||        ||| |||||||||||||||||  || | || ||||||||| ||| ||||| |    |||||       
T  27681954 ccgcctcatgtagtttctgtttgtttatacaaaat-aataataattacactatgaat--tacaaattaaatattatatataaaatattgtgctatat--- 27681861  T
Q  198 aagaaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccc 297  Q
     | || || ||  ||||||||||||||||||||||||||||||||| ||||||||||  || |    |||  |||| ||||  |||||||||||||||||    
T  27681860 -aaaacaacaactaacctgactcattaacattcttctacttgaggaactcaatgatttacaatatctagcacaaagctcttttagatttggtggaatccc 27681762  T
Q  298 tctaatttcctcaagagact 317  Q
    ||||||||||||||||||||    
T  27681761 tctaatttcctcaagagact 27681742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 27590397 - 27590509
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||| |||||||||||||||||||||| || ||||||||||| |||  ||||||   ||   ||||||||||||||||||||||||||||||||||    
T  27590397 aaacctgattcattaacattcttctacttgatgaactcaatgattcacatccataagcatcaaccacttcaagatttggtggaatccctctaatttcctc 27590496  T
Q  310 aagagacttgcaa 322  Q
    |||||| ||||||    
T  27590497 aagagatttgcaa 27590509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 27695862 - 27695973
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    ||||||||||||||||||||||||||| ||| || |||||||||| ||||| ||||||  | ||   | |||||||||||||||||||||||||||||||    
T  27695862 aaacctgactcattaacattcttctacatgatgaactcaatgatttgcattcataagcatagagacttccaagatttggtggaatccctctaatttcctc 27695961  T
Q  310 aagagacttgca 321  Q
    ||| ||||||||    
T  27695962 aagggacttgca 27695973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26887886 - 26887762
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||| ||||   ||||||| | |||||||||||||||||| ||||||||| ||| |||| |||||||||  ||| || |||| ||    
T  26887886 ttacgaaaccagaaagaaagtgtg---tgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttgggaaaagaaactctgtgcatc 26887790  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    ||||||||| || |||||||||||||||    
T  26887789 cagcctcatatagtttctgttagtttat 26887762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27590195 - 27590315
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||||||||||| ||| ||||| |||||||| |||||||||||||| | ||||| ||    
T  27590195 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaataaaaataagtgcatc 27590291  T
Q  101 cagcctcatgtactttctgttagt 124  Q
     ||||||||||| || ||||||||    
T  27590292 gagcctcatgtagttcctgttagt 27590315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 28795322 - 28795190
Alignment:
Q  190 tatattgcaaga-aaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttgg 288  Q
    |||||||||||| |||| || |||||||||||| || |||||||||||||||||| |||||||||| ||||      || |||||   ||||||||||||    
T  28795322 tatattgcaagataaaacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttgg 28795223  T
Q  289 tggaatccctctaatttcctcaagagacttgca 321  Q
    ||||||||||||||||||||| |||||||||||    
T  28795222 tggaatccctctaatttcctcgagagacttgca 28795190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 26649367 - 26649263
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||| |  | || |||||   || |||||||||||||||||| ||||||||||||    
T  26649367 aacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaatttcctca 26649268  T
Q  311 agaga 315  Q
    |||||    
T  26649267 agaga 26649263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 26755335 - 26755231
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||| |  | || |||||   || |||||||||||||||||| ||||||||||||    
T  26755335 aacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaatttcctca 26755236  T
Q  311 agaga 315  Q
    |||||    
T  26755235 agaga 26755231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 321
Target Start/End: Complemental strand, 28789305 - 28789166
Alignment:
Q  183 aataatatatattgcaaga-aaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaa 281  Q
    |||| |||||||||||||| |||| || |||||||||||| || |||| ||||||||||||| |||||||||| ||||      || |||||   | |||    
T  28789305 aatactatatattgcaagataaaacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaa 28789206  T
Q  282 gatttggtggaatccctctaatttcctcaagagacttgca 321  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  28789205 gatttggtggaatccctctaatttcctccagagacttgca 28789166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 25513776 - 25513655
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||| |  || |  |  ||  ||||   ||||||||||||||||||||||||    
T  25513776 aaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttggtggaatccctct 25513677  T
Q  301 aatttcctcaagagacttgcaa 322  Q
    |||||||||||||| |||||||    
T  25513676 aatttcctcaagagccttgcaa 25513655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 26805393 - 26805288
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    ||||||||||||||||||||||||||||||| || ||||||||||  |||   |  || ||||| ||||  ||||| |||||||||||||||||||||||    
T  26805393 aaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgcagaaagctcttttagattcggtggaatccctctaatttcctc 26805294  T
Q  310 aagaga 315  Q
    ||||||    
T  26805293 aagaga 26805288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27715566 - 27715690
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||    |||||| | |||||||||||||||||| ||| |||||||||||||| |||||||| | ||  |  |||| ||    
T  27715566 ttacgaaaccagaaagaaattgtgg---gtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaatttaatataggtgcatc 27715662  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    |||||| ||||| |||||||| ||||||    
T  27715663 cagcctgatgtagtttctgtttgtttat 27715690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26638501 - 26638375
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||||  ||||||| | |||| ||||| ||||||| ||||||| | |||||||   |||| |||  ||  ||||||| ||    
T  26638501 ttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaatatcagtgcatc 26638402  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||| ||||||| ||||||||||||||    
T  26638401 cagcttcatgtagtttctgttagttta 26638375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26744467 - 26744341
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||||  ||||||| | |||| ||||| ||||||| ||||||| | |||||||   |||| |||  ||  ||||||| ||    
T  26744467 ttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaatatcagtgcatc 26744368  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||| ||||||| ||||||||||||||    
T  26744367 cagcttcatgtagtttctgttagttta 26744341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 27608392 - 27608498
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||     || |||||   || |||||||||||||||||||||||||||||||    
T  27608392 aacctgactcattaactttcttttacttgaggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccctctaatttcctca 27608491  T
Q  311 agagact 317  Q
    || ||||    
T  27608492 agggact 27608498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 26145898 - 26145785
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||| |  || |  |  ||  ||||   ||||||||||||||||||||||||    
T  26145898 aaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcacaaagcctttcaagatttggtggaatccctct 26145799  T
Q  301 aatttcctcaagag 314  Q
    ||||||||||||||    
T  26145798 aatttcctcaagag 26145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 321
Target Start/End: Complemental strand, 26962071 - 26961892
Alignment:
Q  144 attacactatgaattatatacatgaaatattatgtatcaaataatatatattgcaagaaaaat----aataaacctgactcattaacattcttctacttg 239  Q
    |||||| ||| |||||||||  ||||||| ||| ||||||||| |||||||||||||| |||     || |||||||||||| || | |||||||||||     
T  26962071 attacattatcaattatata--tgaaatactatatatcaaatactatatattgcaagataaaacaacaacaaacctgactcaatagccttcttctacttt 26961974  T
Q  240 aggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctcaagagacttgca 321  Q
       | ||||||||||| ||| |  | || |||||   | ||||||||||||||||||||||||||||||||||| |||||||    
T  26961973 ccaaactcaatgattcacatctcaatgcagaaagccgtccaagatttggtggaatccctctaatttcctcaagaaacttgca 26961892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 25485891 - 25485771
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| ||||||||||  ||||||| |  || |  |  ||  ||||   ||||||||||||||||||||||||    
T  25485891 aaaaacaacaaacctgactcattaacattcttatacttgaggaattcaatgaataacactcgtttgcaaaaagcctttcaagatttggtggaatccctct 25485792  T
Q  301 aatttcctcaagagacttgca 321  Q
    |||||||||||||| ||||||    
T  25485791 aatttcctcaagagccttgca 25485771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 25547881 - 25547769
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||| |  || |  |  ||  ||||   ||||||||||||||||||||||||    
T  25547881 aaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttggtggaatccctct 25547782  T
Q  301 aatttcctcaaga 313  Q
    |||||||||||||    
T  25547781 aatttcctcaaga 25547769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 27601994 - 27602105
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| || |  |  ||   || |  || |||||||||||||| |||||||||||||||    
T  27601994 aaacctgactcaataacattcttctacttgaggaactcaatgattcacagtcctttgcatgaaatattttaagatttggtggaaaccctctaatttcctc 27602093  T
Q  310 aagagacttgca 321  Q
    |||| |||||||    
T  27602094 aagaaacttgca 27602105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26626226 - 26626100
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||| ||| |  | ||  |||||  ||  |  |||| ||    
T  26626226 ttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatggaaacgaatattggtgcatc 26626127  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    ||||||||||||||||||||| |||||    
T  26626126 cagcctcatgtactttctgtttgttta 26626100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26732203 - 26732077
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||| ||| |  | ||  |||||  ||  |  |||| ||    
T  26732203 ttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatggaaacgaatattggtgcatc 26732104  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    ||||||||||||||||||||| |||||    
T  26732103 cagcctcatgtactttctgtttgttta 26732077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 27662643 - 27662750
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||  |||   |  ||  |||| | |   ||||| |||||||||||||||||||||||    
T  27662643 aaacctgactcaataacattcttctacttgaggaactcaatgatttacatccttctgcataaagatttgttagattgggtggaatccctctaatttcctc 27662742  T
Q  310 aagagact 317  Q
    ||||||||    
T  27662743 aagagact 27662750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 25491403 - 25491461
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcat 259  Q
    ||||| || |||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  25491403 aaaaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcat 25491461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27608176 - 27608303
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccat---ctgttccatttgggaaataaaattcagtgc 97  Q
    ||||||||||||||||||| ||||    |||||| | |||||||||||||||||| ||| ||||| |   ||||||| |||||||| | ||| |  ||||    
T  27608176 ttacgaaaccagaaagaaagtgtga---gtcccctgctttggtgctcaaaccaatctggtatcccctgctctgttccgtttgggaattcaaaataggtgc 27608272  T
Q  98 ctccagcctcatgtactttctgttagtttat 128  Q
     |||||||||||||| |||||||| ||||||    
T  27608273 atccagcctcatgtagtttctgtttgtttat 27608303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 25582608 - 25582495
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||| |  ||  |    ||  ||||   ||||||||||||||||||||||||    
T  25582608 aaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctct 25582509  T
Q  301 aatttcctcaagag 314  Q
    ||||||| ||||||    
T  25582508 aatttccacaagag 25582495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 26058820 - 26058707
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||| |  ||  |    ||  ||||   ||||||||||||||||||||||||    
T  26058820 aaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctct 26058721  T
Q  301 aatttcctcaagag 314  Q
    ||||||| ||||||    
T  26058720 aatttccacaagag 26058707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 314
Target Start/End: Complemental strand, 26078790 - 26078677
Alignment:
Q  201 aaaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctct 300  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||| |  ||  |    ||  ||||   ||||||||||||||||||||||||    
T  26078790 aaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctct 26078691  T
Q  301 aatttcctcaagag 314  Q
    ||||||| ||||||    
T  26078690 aatttccacaagag 26078677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26805616 - 26805536
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaa 84  Q
    ||||||||||||||||||||||||    |||||  | |||||||||||||||||| ||| ||||| |||||||| |||||||||    
T  26805616 ttacgaaaccagaaagaaattgtgg---gtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaa 26805536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 26952698 - 26952618
Alignment:
Q  2 tacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaat 85  Q
    |||||||||||||||||||||||   | ||||| | |||||||||||||||||| ||||||||| ||||||   ||||||||||    
T  26952698 tacgaaaccagaaagaaattgtg---tctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttgggaaat 26952618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27674624 - 27674744
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||||||||||| ||| ||||| ||| || | |||||||||  |||   ||||| ||    
T  27674624 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggtatcccctctttttcgtttgggaaaagaaaacgagtgcatc 27674720  T
Q  101 cagcctcatgtactttctgttagt 124  Q
     ||||||||||| || ||||||||    
T  27674721 gagcctcatgtagttcctgttagt 27674744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 26625953 - 26625917
Alignment:
Q  281 agatttggtggaatccctctaatttcctcaagagact 317  Q
    |||||||||||||||||||||||||||||||||||||    
T  26625953 agatttggtggaatccctctaatttcctcaagagact 26625917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 26731930 - 26731894
Alignment:
Q  281 agatttggtggaatccctctaatttcctcaagagact 317  Q
    |||||||||||||||||||||||||||||||||||||    
T  26731930 agatttggtggaatccctctaatttcctcaagagact 26731894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26876654 - 26876531
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||   ||||||||  ||||||||| |  ||||| | ||||||||| |||||||| ||||||| |  ||  |  |||| ||    
T  26876654 ttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatataggtgcatc 26876558  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| |||||| |||||||    
T  26876557 cagcctcatgtagtttctggtagttta 26876531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 26851408 - 26851358
Alignment:
Q  204 aataataaacctgactcattaacattcttctacttgaggagctcaatgatt 254  Q
    ||||| |||||||||||| |||||||||||| |||||||| ||||||||||    
T  26851408 aataacaaacctgactcaataacattcttctgcttgaggaactcaatgatt 26851358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 27715772 - 27715878
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||  |||   |  ||   ||  ||||  ||||||||||||||||||||||||||||||    
T  27715772 aacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaatttcctca 27715871  T
Q  311 agagact 317  Q
    || ||||    
T  27715872 agggact 27715878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 26980231 - 26980190
Alignment:
Q  280 aagatttggtggaatccctctaatttcctcaagagacttgca 321  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  26980231 aagatttggtggaaaccctctaatttcctcaagaaacttgca 26980190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28789460 - 28789396
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  28789460 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 28789396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 26638294 - 26638183
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcgga-aagttcttcaagatttggtggaatccctctaatttcct 308  Q
    |||||||||||| || | |||||||||||||||| |||||||| |||||||     || || ||||  ||  |||||||||||||||||||||||||| |    
T  26638294 aaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaatt-tagatttggtggaatccctctaatttctt 26638196  T
Q  309 caagagacttgca 321  Q
    |||||| ||||||    
T  26638195 caagagccttgca 26638183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26659069 - 26658946
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||| |||   |||||||| |||||||||||| ||||||| ||| ||||  || |  ||  |||| |||||| |   ||| | ||    
T  26659069 ttacgaaaccagaaagaaactgt---ttgtcccctgatttggtgctcgaaccaatctgggatcctctcagccccggttggaaaataataacgagtacatc 26658973  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| ||||||||||||||    
T  26658972 cagcctcatgtagtttctgttagttta 26658946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 26744260 - 26744149
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcgga-aagttcttcaagatttggtggaatccctctaatttcct 308  Q
    |||||||||||| || | |||||||||||||||| |||||||| |||||||     || || ||||  ||  |||||||||||||||||||||||||| |    
T  26744260 aaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaatt-tagatttggtggaatccctctaatttctt 26744162  T
Q  309 caagagacttgca 321  Q
    |||||| ||||||    
T  26744161 caagagccttgca 26744149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26765040 - 26764917
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||| |||   |||||||| |||||||||||| ||||||| ||| ||||  || |  ||  |||| |||||| |   ||| | ||    
T  26765040 ttacgaaaccagaaagaaactgt---ttgtcccctgatttggtgctcgaaccaatctgggatcctctcagccccggttggaaaataataacgagtacatc 26764944  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| ||||||||||||||    
T  26764943 cagcctcatgtagtttctgttagttta 26764917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26851622 - 26851552
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttcc 74  Q
    |||||||||||||| ||||||||| |||   ||| | |||||||||| ||||||| ||||||||| ||||||||    
T  26851622 ttacgaaaccagaaggaaattgtgtttt---ccctgctttggtgctcgaaccaatctggaatcccttctgttcc 26851552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 26876466 - 26876363
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    ||||||| || | |||||||||||||||||| |   |||||||||||||||     || |||||   ||| | |||||||||||||||||||||||||||    
T  26876466 aaacctgtctaaataacattcttctacttgatggattcaatgattcgcattgccttgcagaaagcctttctatatttggtggaatccctctaatttcctc 26876367  T
Q  310 aaga 313  Q
    ||||    
T  26876366 aaga 26876363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 27662444 - 27662511
Alignment:
Q  7 aaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttcc 74  Q
    |||||||||||||||| | | ||||||| || ||| ||||| ||||||| ||||||||| ||||||||    
T  27662444 aaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctctgttcc 27662511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 27695640 - 27695759
Alignment:
Q  5 gaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatccca---tctgttccatttgggaaataaaattcagtgcctcc 101  Q
    ||||||| ||||||||||||   | ||||| | |||||||||||||||||| ||| |||||    |||||||| |||||||||| |||   ||||| ||     
T  27695640 gaaaccaaaaagaaattgtg---tctcccctgctttggtgctcaaaccaatctggtatccccagctctgttccgtttgggaaatcaaaacgagtgcatcg 27695736  T
Q  102 agcctcatgtactttctgttagt 124  Q
    ||||||||||| || ||||||||    
T  27695737 agcctcatgtagttgctgttagt 27695759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 26851331 - 26851299
Alignment:
Q  281 agatttggtggaatccctctaatttcctcaaga 313  Q
    ||||| |||||||||||||||||||||||||||    
T  26851331 agattcggtggaatccctctaatttcctcaaga 26851299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 265602 - 265713
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||||||| |||||||||| |||||||||| |||||||| | ||||| ||| ||  |||| |||| ||||||||||||||||||||||||||||||    
T  265602 aaacctgactcaataacattcttttacttgaggaactcaatgagttgcattcatacgcaaaaagctctttaagatttggtggaatccctctaatttcctc 265701  T
Q  310 aagagacttgca 321  Q
    |||| |||||||    
T  265702 aagatacttgca 265713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 265391 - 265515
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    |||||||||||||||||||||||| ||   |||  | |||||||||||||||||| ||| ||||| |||||||| ||||||||||| || | ||||| ||    
T  265391 ttacgaaaccagaaagaaattgtgttt---cccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaatacaaataagtgcatc 265487  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
     ||| ||||||| |||||||||||||||    
T  265488 gagcttcatgtagtttctgttagtttat 265515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 28124969 - 28125006
Alignment:
Q  284 tttggtggaatccctctaatttcctcaagagacttgca 321  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28124969 tttggtggaatccctctaatttcctcaagagacttgca 28125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 28130000 - 28130038
Alignment:
Q  284 tttggtggaatccctctaatttcctcaagagacttgcaa 322  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  28130000 tttggtggaaaccctctaatttcctcaagagacttgcaa 28130038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 22024168 - 22024057
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatt-tataagcggaaagttcttcaagatttggtggaatccctctaatttcct 308  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||  || |||||   ||||||||||||||||||||||||||||||||    
T  22024168 aaacctgactcaataacattcttctacttgaggaactcaatgatttgcattctat-tgcagaaagcctttcaagatttggtggaatccctctaatttcct 22024070  T
Q  309 caagagacttgca 321  Q
    ||| ||| |||||    
T  22024069 caacagatttgca 22024057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 29271111 - 29271215
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| || |  | | | ||||| ||||  |||||||||||||||||||||||||||| |    
T  29271111 aacctgactcattaacattcttttacttgaggaactcaatgattcacaatattcaacagaaagctcttttagatttggtggaatccctctaatttcctta 29271210  T
Q  311 agaga 315  Q
    |||||    
T  29271211 agaga 29271215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 321
Target Start/End: Original strand, 1931 - 2070
Alignment:
Q  183 aataatatatattgcaaga-aaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaa 281  Q
    |||| |||||||||||||| |||| || |||||||||||| || ||||||||||||||| || |||||||||| ||||      || |||||   |||||    
T  1931 aatactatatattgcaagataaaacaacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgcagaaagcatttcaa 2030  T
Q  282 gatttggtggaatccctctaatttcctcaagagacttgca 321  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  2031 gatttggtggaatccctctaatttcctccagagacttgca 2070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 321
Target Start/End: Original strand, 10894 - 11033
Alignment:
Q  183 aataatatatattgcaaga-aaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaa 281  Q
    |||| |||||||||||||| |||| || |||||||||||| || |||| ||||||||||||| |||||||||| ||||      || |||||   | |||    
T  10894 aatactatatattgcaagataaaacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaa 10993  T
Q  282 gatttggtggaatccctctaatttcctcaagagacttgca 321  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  10994 gatttggtggaatccctctaatttcctccagagacttgca 11033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1773 - 1837
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  1773 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10739 - 10803
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  10739 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 10803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 10448 - 10316
Alignment:
Q  190 tatattgcaaga-aaaataataaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttgg 288  Q
    |||||||||||| |||| || |||||||||||| || |||||||||||||||||| |||||||||| ||||      || |||||   ||||||||||||    
T  10448 tatattgcaagataaaacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttgg 10349  T
Q  289 tggaatccctctaatttcctcaagagacttgca 321  Q
    || |||||||||||||||||| |||||||||||    
T  10348 tgcaatccctctaatttcctccagagacttgca 10316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10610 - 10546
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatc 68  Q
    ||||||||||||||||||||||||   | ||||| | |||||||||| ||||||| ||||||||||||    
T  10610 ttacgaaaccagaaagaaattgtg---tctcccctgctttggtgctcgaaccaatctggaatcccatc 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 16379 - 16255
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||    |||||| | |||||||||||||||||| ||| |||||||||||||| |||||||| | ||  |  |||| ||    
T  16379 ttacgaaaccagaaagaaattgtgg---gtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgggaatttaatataggtgcatc 16283  T
Q  101 cagcctcatgtactttctgttagtttat 128  Q
    |||||| ||||| |||||||| ||||||    
T  16282 cagcctgatgtagtttctgtttgtttat 16255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 16173 - 16067
Alignment:
Q  211 aacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctca 310  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||  |||   |  ||   ||  ||||  ||||||||||||||||||||||||||||||    
T  16173 aacctgactcattaatattcttttacttgaggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaatttcctca 16074  T
Q  311 agagact 317  Q
    || ||||    
T  16073 agggact 16067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 18696516 - 18696639
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||| ||||||||||||||||    ||| |||| | |||| ||||| ||||||| ||||||||| |||||||| ||||||||| ||||||  ||||  |    
T  18696516 ttacggaaccagaaagaaattga---ttgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttgggaaagaaaatttggtgcacc 18696612  T
Q  101 cagcctcatgtactttctgttagttta 127  Q
    |||||||||||| || |||||||||||    
T  18696613 cagcctcatgtaattgctgttagttta 18696639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 18686925 - 18687028
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||  || | ||| ||   ||| | ||  ||||| |||||||||||||||||||||||    
T  18686925 aaacctgactcaataacattcttctacttgaggaactcaatgatttacaatcatatgcatcaagatatttgagattcggtggaatccctctaatttcctc 18687024  T
Q  310 aaga 313  Q
    ||||    
T  18687025 aaga 18687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 18696719 - 18696822
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatttataagcggaaagttcttcaagatttggtggaatccctctaatttcctc 309  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||  |||  ||| ||   ||| | ||  ||||| ||||||| |||||||||||||||    
T  18696719 aaacctgactcaataacattcttctacttgaggaactcaatgatttacatcgatatgcatcaagatatttgagattcggtggaagccctctaatttcctc 18696818  T
Q  310 aaga 313  Q
    ||||    
T  18696819 aaga 18696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 18652794 - 18652838
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgatt 254  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  18652794 aaacctgactcaataacattcttctacttgaggaactcaatgatt 18652838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 18676876 - 18676920
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgatt 254  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  18676876 aaacctgactcaataacattcttctacttgaggaactcaatgatt 18676920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 18721390 - 18721434
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgatt 254  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  18721390 aaacctgactcaataacattcttctacttgaggaactcaatgatt 18721434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 18728793 - 18728856
Alignment:
Q  192 tattgcaagaaaaat-aataaacctgactcattaacattcttctacttgaggagctcaatgatt 254  Q
    ||||||||||||||  || |||||||||||| ||||||||||||| ||||||| ||||||||||    
T  18728793 tattgcaagaaaaaacaacaaacctgactcaataacattcttctagttgaggaactcaatgatt 18728856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 18686778 - 18686845
Alignment:
Q  60 aatcccatctgttccatttgggaaataaaattcagtgcctccagcctcatgtactttctgttagttta 127  Q
    |||||| |||||||| |||||||||||||||   ||||  ||||||||||||| || |||||||||||    
T  18686778 aatcccctctgttccgtttgggaaataaaatgaggtgcacccagcctcatgtaattgctgttagttta 18686845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17990202 - 17990320
Alignment:
Q  1 ttacgaaaccagaaagaaattgtgctttgtccccggatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaaattcagtgcctc 100  Q
    ||||||||||||||||||||||||   || |||| | |||||||||||||||||| ||||||||| ||||| ||  | |||||| |||  || |||| ||    
T  17990202 ttacgaaaccagaaagaaattgtg---tgccccctgctttggtgctcaaaccaatctggaatcccttctgtcccggtcgggaaacaaatctctgtgcatc 17990298  T
Q  101 cagcctcatgtactttctgtta 122  Q
    |||| |||||||  ||||||||    
T  17990299 cagcttcatgtaggttctgtta 17990320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 17990418 - 17990521
Alignment:
Q  210 aaacctgactcattaacattcttctacttgaggagctcaatgattcgcatt-tataagcggaaagttcttcaagatttggtggaatccctctaatttcct 308  Q
    |||||||||| | ||| |||||||||||||||||  ||||||||| ||| | |||  || || | || ||||||||| |||||||||||| |||||||||    
T  17990418 aaacctgactaagtaaaattcttctacttgaggaaatcaatgatttgcactctatt-gcagatattttttcaagattcggtggaatccctttaatttcct 17990516  T
Q  309 caaga 313  Q
    |||||    
T  17990517 caaga 17990521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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