View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14125_low_5 (Length: 328)
Name: NF14125_low_5
Description: NF14125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14125_low_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 2651090 - 2650788
Alignment:
| Q |
17 |
aaagatagcaagtagcaatagtcaactacaacatataacttcgttaggaaggatatactgattagtatattataaccaagttttctggnnnnnnntattc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
2651090 |
aaagatagcaagtagcaatagtcaactacaacatataacttcgttaggaaggatatactgattagtaaattataaccaagttttctggaaaaaaatattc |
2650991 |
T |
|
| Q |
117 |
aattgcttttaaagtaatttgataacactataatttgagtttattttagaatttgggttgagcataacttgcttttaaagtgaaggaagtctctctccct |
216 |
Q |
| |
|
||||| |||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2650990 |
aattgtttttaaagg----ttctaa----att-tttgagtttattttagaatttgggttgagcataacttgcttttaaagtgaaggaagtctctctccct |
2650900 |
T |
|
| Q |
217 |
ttaaacatatttttatgtcatattcatttaatgtaagacttttatatgtaacatacaacccatccgaattttgacatcgagtgtcccgagagaacttaga |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||| ||||| |
|
|
| T |
2650899 |
ttaaacatattttcatgtcatattcatttaatgtgagacttttatatgtaacacacaacccatccgagttttgacatcgaatgtcccaagagaatttaga |
2650800 |
T |
|
| Q |
317 |
atatgatagcat |
328 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2650799 |
atatgatagcat |
2650788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University