View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14126_high_3 (Length: 258)

Name: NF14126_high_3
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14126_high_3
NF14126_high_3
[»] chr4 (9 HSPs)
chr4 (47-258)||(18652491-18652702)
chr4 (11-258)||(18676543-18676784)
chr4 (41-258)||(18686613-18686833)
chr4 (100-258)||(18721140-18721298)
chr4 (47-258)||(18728515-18728723)
chr4 (30-258)||(18696408-18696627)
chr4 (100-161)||(18700968-18701029)
chr4 (41-81)||(18681940-18681980)
chr4 (41-81)||(18726172-18726212)
[»] chr1 (2 HSPs)
chr1 (104-227)||(265354-265471)
chr1 (116-199)||(26139024-26139107)
[»] chr6 (31 HSPs)
chr6 (103-199)||(28795426-28795522)
chr6 (101-255)||(26851514-26851662)
chr6 (102-227)||(26805536-26805655)
chr6 (107-255)||(26876546-26876688)
chr6 (103-199)||(28789402-28789498)
chr6 (102-247)||(27662399-27662541)
chr6 (102-255)||(27715527-27715674)
chr6 (103-196)||(26659014-26659107)
chr6 (103-196)||(26764985-26765078)
chr6 (116-249)||(26952597-26952724)
chr6 (109-256)||(26061551-26061690)
chr6 (109-256)||(26081521-26081660)
chr6 (123-255)||(26962084-26962210)
chr6 (116-199)||(26638440-26638526)
chr6 (116-199)||(26744406-26744492)
chr6 (116-255)||(27590170-27590303)
chr6 (104-255)||(27681943-27682088)
chr6 (119-255)||(26626115-26626248)
chr6 (119-255)||(26732092-26732225)
chr6 (168-255)||(26808449-26808530)
chr6 (102-255)||(27608137-27608287)
chr6 (113-199)||(26826917-26827003)
chr6 (128-252)||(27657793-27657912)
chr6 (102-196)||(27674585-27674679)
chr6 (102-196)||(27695597-27695691)
chr6 (129-199)||(28142686-28142756)
chr6 (127-182)||(27528708-27528763)
chr6 (134-227)||(26887806-26887893)
chr6 (147-199)||(2170649-2170701)
chr6 (123-199)||(27074279-27074355)
chr6 (116-199)||(31287620-31287706)
[»] chr2 (1 HSPs)
chr2 (110-199)||(17990171-17990260)
[»] scaffold0277 (2 HSPs)
scaffold0277 (103-199)||(1735-1831)
scaffold0277 (103-199)||(10701-10797)
[»] scaffold0349 (1 HSPs)
scaffold0349 (102-255)||(16271-16418)
[»] scaffold0419 (1 HSPs)
scaffold0419 (127-199)||(10552-10624)
[»] chr8 (1 HSPs)
chr8 (102-196)||(29270863-29270957)
[»] scaffold0286 (1 HSPs)
scaffold0286 (147-199)||(12560-12612)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 47 - 258
Target Start/End: Original strand, 18652491 - 18652702
Alignment:
Q  47 tgtacattcataaccattgacaaacaacttaaatctgcaagaaatatattgagcatccggaagaataataatagaagttatagaagggatctttttacag 146  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  18652491 tgtacattcataaccattgacaaaaaaattaaatctgaaagaaatatattgaacatccggaagaataataatagaagttatagaagggatctttttacgg 18652590  T
Q  147 aaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttgggaaacaaatattggtgcacccag 246  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18652591 aaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatcccctctgttccgtttgggaaacaaatattggtgcacccag 18652690  T
Q  247 cctcatgtaatt 258  Q
    ||||||||||||    
T  18652691 cctcatgtaatt 18652702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 18676543 - 18676784
Alignment:
Q  11 cgaagaatatcgccatttaaattcaaaatttggagatgtacattcataaccattgacaaacaacttaaatctgcaagaaatatattgagcatccggaaga 110  Q
    ||||||| ||| ||||||||||| ||||| |||| |||||| ||||||||||||||||||||| ||||||||| ||      | |||| |||||||||||    
T  18676543 cgaagaaaatccccatttaaatttaaaatctggatatgtacgttcataaccattgacaaacaaattaaatctgaaa------tgttgaacatccggaaga 18676636  T
Q  111 ataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccct 210  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||    
T  18676637 ataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatctcct 18676736  T
Q  211 ctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaatt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18676737 ctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaatt 18676784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 18686613 - 18686833
Alignment:
Q  41 tggagatgtacattcataaccattgacaaacaacttaaatctgcaagaaatatattgagcatccggaagaataataatagaagttatagaagggatcttt 140  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||    |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18686613 tggaaatgtacattcataaccattgacaaacaaattaaatctgaaat---tatattgaacatccggaagaataattatagaagttatagaagggatcttt 18686709  T
Q  141 ttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaa------tgctaatcccctctgttccgtttgggaaacaaatat 234  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||      | ||||||||||||||||||||||||||| |||       
T  18686710 ttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctattcctaatcccctctgttccgtttgggaaataaaatg 18686809  T
Q  235 tggtgcacccagcctcatgtaatt 258  Q
     |||||||||||||||||||||||    
T  18686810 aggtgcacccagcctcatgtaatt 18686833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 18721140 - 18721298
Alignment:
Q  100 catccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  18721140 catccggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaat 18721239  T
Q  200 gctaatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaatt 258  Q
     ||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||    
T  18721240 cctaatcctctctgttccgtttgggaaagaaagtgtggtgcacccagcctcatgtaatt 18721298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 258
Target Start/End: Original strand, 18728515 - 18728723
Alignment:
Q  47 tgtacattcataaccattgacaaacaacttaaatctgcaagaaatatattgagcatccggaagaataataatagaagttatagaagggatctttttacag 146  Q
    ||||||||||| ||| ||||||||||| |||||||   || ||   |||| | ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  18728515 tgtacattcatgacctttgacaaacaaattaaatcctaaataa---tattcaacattcggaagaataataataaaagttatagaagggatctttttacag 18728611  T
Q  147 aaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttggg-aaacaaatattggtgcaccca 245  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||  |||||||||||    
T  18728612 aaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttgggaaaacaaat-gtggtgcaccca 18728710  T
Q  246 gcctcatgtaatt 258  Q
    |||||||||||||    
T  18728711 gcctcatgtaatt 18728723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 18696408 - 18696627
Alignment:
Q  30 aattcaaaatttggagatgtacattcataaccattgacaaacaacttaaatctgcaagaaatatattgagcatccggaagaataataatagaagttatag 129  Q
    |||||||| | |||| ||||||| |||||||||||||||||||| ||||||  | ||    |||||  | |||||||||||||||||||| || ||||||    
T  18696408 aattcaaattctggaaatgtacagtcataaccattgacaaacaaattaaattcgaaac---tatatccaacatccggaagaataataataaaatttatag 18696504  T
Q  130 aagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttgggaaaca 229  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||      ||||||||||||||||||||||||| |    
T  18696505 aagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctgg------aatcccctctgttccgtttgggaaaga 18696598  T
Q  230 aatattggtgcacccagcctcatgtaatt 258  Q
    ||  |||||||||||||||||||||||||    
T  18696599 aaatttggtgcacccagcctcatgtaatt 18696627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 18700968 - 18701029
Alignment:
Q  100 catccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaatt 161  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18700968 catccggaagaataataatagaagttatagatgggatctttttacagaaccagaaagaaatt 18701029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 18681940 - 18681980
Alignment:
Q  41 tggagatgtacattcataaccattgacaaacaacttaaatc 81  Q
    |||| ||||||||||||||||||||||||| || |||||||    
T  18681940 tggaaatgtacattcataaccattgacaaaaaaattaaatc 18681980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 18726172 - 18726212
Alignment:
Q  41 tggagatgtacattcataaccattgacaaacaacttaaatc 81  Q
    |||| ||||||||||||||||||||||||| || |||||||    
T  18726172 tggaaatgtacattcataaccattgacaaaaaaattaaatc 18726212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 265354 - 265471
Alignment:
Q  104 cggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgcta 203  Q
    |||||||||||||||| |||| | |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||||| |||||||||||           
T  265354 cggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctgg------t 265447  T
Q  204 atcccctctgttccgtttgggaaa 227  Q
    ||||||||||||||||||||||||    
T  265448 atcccctctgttccgtttgggaaa 265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 26139107 - 26139024
Alignment:
Q  116 aatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||||  || |||  |  ||||||||||||||||||||||||    
T  26139107 aatagaacttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaat 26139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 28795522 - 28795426
Alignment:
Q  103 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||| || |||||||||| | |||||||||||||||||||| |||||||| |||||||  |  ||| ||||||||||||||||||||||||||||    
T  28795522 ccggaaaaagaataatagaaataatagaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaat 28795426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 255
Target Start/End: Complemental strand, 26851662 - 26851514
Alignment:
Q  101 atccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatg 200  Q
    |||||||| |||||||||| | ||||||||||||||||||||||  |||||||| |||||||  |   || |||||||||||||||||||||||||        
T  26851662 atccggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctgg---- 26851567  T
Q  201 ctaatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
      |||||| ||||||||| |||| |||  ||||||||| || ||||| |||||||    
T  26851566 --aatcccttctgttccgcttggcaaaataatattggtacatccagcgtcatgta 26851514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 26805655 - 26805536
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgc 201  Q
    ||||||||||||| |||| | |||||||||||||| | |||||  ||||||||||||||||   | ||||||||||||||||| |||||||||||         
T  26805655 tccggaagaataaaaatacatgttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctgg----- 26805561  T
Q  202 taatcccctctgttccgtttgggaaa 227  Q
      ||||||||||||||||||||||||    
T  26805560 -tatcccctctgttccgtttgggaaa 26805536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 26876688 - 26876546
Alignment:
Q  107 aagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatc 206  Q
    ||||| || |||||||  |||| |||||||||||||||  |||||||||||||||| ||| ||| || ||||||| | |||||| |||||      ||||    
T  26876688 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctgg------aatc 26876595  T
Q  207 ccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
    ||||||||||||||||||| |  ||||| |||||| |||||||||||||    
T  26876594 ccctctgttccgtttgggagaagaatataggtgcatccagcctcatgta 26876546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 28789498 - 28789402
Alignment:
Q  103 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||| || |||||||||| |  ||||||||||||||||||  ||||||||||||||||  |  ||| ||||||||||||||||||||||||||||    
T  28789498 ccggaaaaagaataatagaaatattagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaat 28789402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 27662399 - 27662541
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattga---ttgacccttgctttggtgctcgaaccaatctggaa 198  Q
    ||||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||    || ||| ||  ||| |||||||||||||||||      
T  27662399 tccggaataagaataatacaagttatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctgg-- 27662496  T
Q  199 tgctaatcccctctgttccgtttgggaaacaaatattggtgcacccagc 247  Q
        |||||||||||||||| |||| |||  ||||||| |||| |||||    
T  27662497 ----aatcccctctgttccggttggcaaaacaatattgttgcaaccagc 27662541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 27715527 - 27715674
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgc 201  Q
    ||||||| |||||| ||| |||||||||||||||| | |||||  ||||||||||||||||   | ||| ||||||||||||| |||||||||||         
T  27715527 tccggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg----- 27715621  T
Q  202 taatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
      ||||| |||||||||||||||||   ||||| |||||| ||||||| |||||    
T  27715622 -tatcccatctgttccgtttgggaatttaatataggtgcatccagcctgatgta 27715674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 26659107 - 26659014
Alignment:
Q  103 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctgg 196  Q
    ||||||||| || |||| || | |||||||||||||||||||  ||||||||||||| || ||| ||| || ||||||||||||||||||||||    
T  26659107 ccggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgg 26659014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 26765078 - 26764985
Alignment:
Q  103 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctgg 196  Q
    ||||||||| || |||| || | |||||||||||||||||||  ||||||||||||| || ||| ||| || ||||||||||||||||||||||    
T  26765078 ccggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgg 26764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 26952724 - 26952597
Alignment:
Q  116 aatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgtt 215  Q
    |||| |||||||||||||||||||| |||  ||||||||||||||||  |  ||| || |||||||||| |||||||||||      |||||||||||||    
T  26952724 aatacaagttatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctgg------aatcccctctgtt 26952631  T
Q  216 ccgtttgggaaacaaatattggtgcacccagcct 249  Q
      ||||||||||  ||||| |||||| |||||||    
T  26952630 ttgtttgggaaatgaatataggtgcatccagcct 26952597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 26061690 - 26061551
Alignment:
Q  109 gaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatccc 208  Q
    |||||||||||  ||||||||||||||| | |||||  ||||||||| ||||||  || ||| || |||||||||  |||||||||||      ||||||    
T  26061690 gaataataatactagttatagaagggatttatttacgaaaccagaaaaaaattg--tgtcccgtgatttggtgctttaaccaatctgg------aatccc 26061599  T
Q  209 ctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaa 256  Q
    |||||||||  |||| ||||||||||||||||| | | ||||||||||    
T  26061598 ctctgttcctgttggaaaacaaatattggtgcatctatcctcatgtaa 26061551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 26081660 - 26081521
Alignment:
Q  109 gaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatccc 208  Q
    |||||||||||  ||||||||||||||| | |||||  ||||||||| ||||||  || ||| || |||||||||  |||||||||||      ||||||    
T  26081660 gaataataatactagttatagaagggatttatttacgaaaccagaaaaaaattg--tgtcccgtgatttggtgctttaaccaatctgg------aatccc 26081569  T
Q  209 ctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaa 256  Q
    |||||||||  |||| ||||||||||||||||| | | ||||||||||    
T  26081568 ctctgttcctgttggaaaacaaatattggtgcatctatcctcatgtaa 26081521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 26962210 - 26962084
Alignment:
Q  123 gttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttg 222  Q
    ||||||| |||||||||||| |   |||||||||||| ||  |  ||||| ||||||||||| ||||||||||||||      ||||||  |||||||||    
T  26962210 gttatagtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaat------cccctcacttccgtttg 26962117  T
Q  223 ggaaacaaatattggtgcacccagcctcatgta 255  Q
    |||||| ||| |||||||| |||||||||||||    
T  26962116 ggaaactaatcttggtgcatccagcctcatgta 26962084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 26638526 - 26638440
Alignment:
Q  116 aatagaagttatagaagggatctttttacagaaccagaaagaaattg---attgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||     || ||| ||||||| ||||||||||||||||||||    
T  26638526 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaat 26638440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 26744492 - 26744406
Alignment:
Q  116 aatagaagttatagaagggatctttttacagaaccagaaagaaattg---attgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||     || ||| ||||||| ||||||||||||||||||||    
T  26744492 aatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaat 26744406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 27590170 - 27590303
Alignment:
Q  116 aatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgtt 215  Q
    |||| |||| ||||||||||| | |||||  ||||||||||||||||  |  ||| ||||||||||||| |||||||||||       ||||||||||||    
T  27590170 aatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctgg------tatcccctctgtt 27590263  T
Q  216 ccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
    |||||||||||| ||| ||  ||||| | |||||||||||    
T  27590264 ccgtttgggaaataaaaataagtgcatcgagcctcatgta 27590303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 27682088 - 27681943
Alignment:
Q  104 cggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgcta 203  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  |||||||||||||||    | ||| ||||||||||||| |||||||||||           
T  27682088 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctgg------t 27681995  T
Q  204 atcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
    ||||||||| |||| ||||||||| |||| |||||||| || ||||||||||    
T  27681994 atcccctctcttccatttgggaaataaatcttggtgcatcccgcctcatgta 27681943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 26626248 - 26626115
Alignment:
Q  119 agaagttatagaagggatctttttacagaaccagaaagaaattg---attgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgtt 215  Q
    |||||| |||||||||||||||||||  ||||||||||||||||     || ||| || |||| |||||||||||||||||      |||||||||| |     
T  26626248 agaagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctgg------aatcccctctttg 26626155  T
Q  216 ccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
     ||||  |||||| |||||||||||| |||||||||||||    
T  26626154 gcgttatggaaacgaatattggtgcatccagcctcatgta 26626115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 26732225 - 26732092
Alignment:
Q  119 agaagttatagaagggatctttttacagaaccagaaagaaattg---attgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgtt 215  Q
    |||||| |||||||||||||||||||  ||||||||||||||||     || ||| || |||| |||||||||||||||||      |||||||||| |     
T  26732225 agaagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctgg------aatcccctctttg 26732132  T
Q  216 ccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
     ||||  |||||| |||||||||||| |||||||||||||    
T  26732131 gcgttatggaaacgaatattggtgcatccagcctcatgta 26732092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 26808530 - 26808449
Alignment:
Q  168 cccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
    |||||| |||||||||||||||||||||||||      |||||||||||  ||||| ||||||||||||||| |  ||||||||||||    
T  26808530 cccttgatttggtgctcgaaccaatctggaat------cccctctgttctttttggcaaacaaatattggtggatacagcctcatgta 26808449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 27608137 - 27608287
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgc 201  Q
    |||||||||||||  ||| ||||||| |||||||| | |||||  ||||||||||||| ||   | ||| ||||||||||||| ||||||||||| || |    
T  27608137 tccggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcc 27608236  T
Q  202 taatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
        |  ||||||||||||||||||   || || |||||| |||||||||||||    
T  27608237 ---cctgctctgttccgtttgggaattcaaaataggtgcatccagcctcatgta 27608287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 26827003 - 26826917
Alignment:
Q  113 aataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||||||  |||||||||||| |||||||  ||||||||||||||||  |  ||  ||||||||||||| |||| |||||||||    
T  26827003 aataatagaacgtatagaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaat 26826917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 27657793 - 27657912
Alignment:
Q  128 agaagggatctttttacagaaccagaaagaaattg-attgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttgggaa 226  Q
    |||||||||||||||||  |||||||||||||||| ||   ||| || ||||||||||| ||||||||||      |||||||||| || |||||| |||    
T  27657793 agaagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctgg------aatcccctcttttacgtttgagaa 27657886  T
Q  227 acaaatattggtgcacccagcctcat 252  Q
    || ||||| |||||| ||||| ||||    
T  27657887 acgaatatcggtgcatccagcatcat 27657912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 27674585 - 27674679
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctgg 196  Q
    |||||| |||||  |||| |||| ||||||||||| | |||||  ||||||||||||||||  |  ||| ||||||||||||| |||||||||||    
T  27674585 tccggaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctgg 27674679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 27695597 - 27695691
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctgg 196  Q
    ||||||||||||| |||| ||| |||||||||||| | ||||   ||||| ||||||||||  |  ||| ||||||||||||| |||||||||||    
T  27695597 tccggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctgg 27695691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 28142756 - 28142686
Alignment:
Q  129 gaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||| ||||| ||  |||||||||| ||||||| | ||||||||||||||||| ||||| ||||||||    
T  28142756 gaagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaat 28142686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 27528708 - 27528763
Alignment:
Q  127 tagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgc 182  Q
    ||||||||||||||||||  ||||||||||||||||  || |||||||||| ||||    
T  27528708 tagaagggatctttttacgaaaccagaaagaaattgtgtgtcccttgcttttgtgc 27528763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 26887893 - 26887806
Alignment:
Q  134 gatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgctaatcccctctgttccgtttgggaaa 227  Q
    ||||| |||||  ||||||||||||| ||  || ||| ||||||||||||| |||||||||||      |||||||||| ||||||||||||||    
T  26887893 gatctctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctgg------aatcccctctcttccgtttgggaaa 26887806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 2170649 - 2170701
Alignment:
Q  147 aaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||||||||||||||| | ||||||||||| || || ||||| ||||||||    
T  2170649 aaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaat 2170701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 27074355 - 27074279
Alignment:
Q  123 gttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||| |||||||| |||||  ||||| ||||||||||  |  ||| ||||| ||||||| ||||||||||||||    
T  27074355 gttatagtagggatctctttactaaaccaaaaagaaattgcatttcccatgcttcggtgctcaaaccaatctggaat 27074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 31287706 - 31287620
Alignment:
Q  116 aatagaagttatagaagggatctttttacagaaccagaaagaaattg---attgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||| |||| |||||||||||||||||||  |||||||||| |||||    ||| ||| || |||||||||| ||||||| ||||||    
T  31287706 aatataagtaatagaagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaat 31287620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 17990171 - 17990260
Alignment:
Q  110 aataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||| |||||||||||||||||||| | |||||  ||||||||||||||||  || ||| ||||||||||||| ||||||||||||||    
T  17990171 aataatgatagaagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaat 17990260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 1735 - 1831
Alignment:
Q  103 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||| || |||||||||| |  ||||||||||||||||||  ||||||||||||||||  |  ||| ||||||||||||||||||||||||||||    
T  1735 ccggaaaaagaataatagaaatattagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaat 1831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 10701 - 10797
Alignment:
Q  103 ccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||| || |||||||||| |  ||||||||||||||||||  ||||||||||||||||  |  ||| ||||||||||||||||||||||||||||    
T  10701 ccggaaaaagaataatagaaatattagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaat 10797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 255
Target Start/End: Complemental strand, 16418 - 16271
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaatgc 201  Q
    ||||||| |||||| ||| |||||||||||||||| | |||||  ||||||||||||||||   | ||| ||||||||||||| |||||||||||         
T  16418 tccggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg----- 16324  T
Q  202 taatcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgta 255  Q
      ||||| |||||||||||||||||   ||||| |||||| ||||||| |||||    
T  16323 -tatcccatctgttccgtttgggaatttaatataggtgcatccagcctgatgta 16271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 10624 - 10552
Alignment:
Q  127 tagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    ||||||||||||||||||  ||||||||||||||||  |  ||| ||||||||||||||||||||||||||||    
T  10624 tagaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaat 10552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 29270863 - 29270957
Alignment:
Q  102 tccggaagaataataatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctgg 196  Q
    |||||||| |||| |||| |||| ||||||||||| | |||||  ||||||||||||||||   | ||| |||||||||| ||||||||||||||    
T  29270863 tccggaagcataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctgg 29270957  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 12612 - 12560
Alignment:
Q  147 aaccagaaagaaattgattgacccttgctttggtgctcgaaccaatctggaat 199  Q
    |||||||||||||||||| | ||||||||||| || || ||||| ||||||||    
T  12612 aaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaat 12560  T

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