View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14126_high_4 (Length: 239)
Name: NF14126_high_4
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14126_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33801566 - 33801346
Alignment:
| Q |
1 |
ttgtgatacaccagaaccttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcctagttgtaaaccaggtatt |
100 |
Q |
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| T |
33801566 |
ttgtggtacaccagaaccttgtgatccctacggaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcctagttgtaaaccaggtttt |
33801467 |
T |
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| Q |
101 |
gcctctccttgcaatgatgaatcaaaaagatctgttgaatttctgaaagttgatgatggacttggttactttgcgcttgattttcttcatccctattcga |
200 |
Q |
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| T |
33801466 |
gcctctccttgcgatgatgaatcaaaaagatctgttgaatttctgaaagttgatgatggacttggttactttgcgcttgattttcttcatccctattcga |
33801367 |
T |
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| Q |
201 |
atactgatttatccagttgtc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33801366 |
atactgatttatccagttgtc |
33801346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31027939 - 31028151
Alignment:
| Q |
1 |
ttgtgatacaccagaaccttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcctagttgtaaaccaggtatt |
100 |
Q |
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||||| |||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
31027939 |
ttgtggtacaccagaaccttgtgatccctacaatatatgcgcaaacaaacgtacgtgtagctgtcctcatgttcttcttcctagttgtaaaccaggtttt |
31028038 |
T |
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| Q |
101 |
gcctctccttgcaatgatg---aatcaaaaagatctgttgaatttctgaaagttgatgatggacttggttactttgcgcttgattttcttcatccctatt |
197 |
Q |
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| T |
31028039 |
gtctctccttgtgatgatgataaatcaaaaaagtctatagaatttctgaaagctgatgatggacttggctactttgcgcttgattttcttcatccctatt |
31028138 |
T |
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| Q |
198 |
cgaatactgattt |
210 |
Q |
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|||||| ||||| |
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| T |
31028139 |
tgaataccgattt |
31028151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33806039 - 33805826
Alignment:
| Q |
1 |
ttgtgatacaccagaaccttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcct---agttgtaaaccaggt |
97 |
Q |
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||||||||||||||||||||||||||| |||| || || |||| ||||||| ||||||||||||| |||||||| || | ||||||||||||||| |
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| T |
33806039 |
ttgtgatacaccagaaccttgtgatccttacaacatttgtgcaaataaccgtaggtgtagctgtccttctgttcttcatcatcgtagttgtaaaccaggt |
33805940 |
T |
|
| Q |
98 |
attgcctctccttgcaatgatga---atcaaaaagatctgttgaatttctgaaagttgatgatggacttggttactttgcgcttgattttcttcatccct |
194 |
Q |
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||| ||| ||||| |||||| |||| ||| ||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
33805939 |
tttgtctcgccttgtgttgatgataaatcagaaaagtctattgaatttctgaaagctgatgatggacttagttactttgcacttgattttcttcatccct |
33805840 |
T |
|
| Q |
195 |
attcgaatactgat |
208 |
Q |
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|| |||||||||| |
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| T |
33805839 |
ctttgaatactgat |
33805826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33812265 - 33812478
Alignment:
| Q |
1 |
ttgtgatacaccagaaccttgtgatccctacagaatatgctcaaacaaccgtatgtgtagctgtcctcttgttcttcttcct---agttgtaaaccaggt |
97 |
Q |
| |
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||||||||||||||||||||||||||| |||| || || |||| ||||||| ||||||||||||| |||||||| || | ||||||||||||||| |
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| T |
33812265 |
ttgtgatacaccagaaccttgtgatccttacaacatttgtgcaaataaccgtaggtgtagctgtccttctgttcttcatcatcgtagttgtaaaccaggt |
33812364 |
T |
|
| Q |
98 |
attgcctctccttgcaatgatga---atcaaaaagatctgttgaatttctgaaagttgatgatggacttggttactttgcgcttgattttcttcatccct |
194 |
Q |
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||| ||| ||||| |||||| |||| ||| ||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
33812365 |
tttgtctcgccttgtgttgatgataaatcagaaaagtctattgaatttctgaaagctgatgatggacttagttactttgcacttgattttcttcatccct |
33812464 |
T |
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| Q |
195 |
attcgaatactgat |
208 |
Q |
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|| |||||||||| |
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| T |
33812465 |
ctttgaatactgat |
33812478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 49463040 - 49463112
Alignment:
| Q |
138 |
aatttctgaaagttgatgatggacttggttactttgcgcttgattttcttcatccctattcgaatactgattt |
210 |
Q |
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||||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||| |||||| || ||||| |
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| T |
49463040 |
aatttttgaaaggtgatgacggacttggttactttgcacttgattttcttcagcccttttcgaaaaccgattt |
49463112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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