View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14126_low_1 (Length: 574)
Name: NF14126_low_1
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14126_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 14370927 - 14370658
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14370927 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacaacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
14370828 |
T |
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| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14370827 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
14370728 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14370727 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagt |
14370658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 14242394 - 14242663
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14242394 |
catcagaaaccatgcattgaaccgttaactcaatgtgattttcataaagaacaacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
14242493 |
T |
|
| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| |||||||||||||||| ||| |||||| |
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| T |
14242494 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctgagctcaagaaaaagaagaaccctttgtggaaacaaacaaaaacaacaaaccaa |
14242593 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagt |
278 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || || ||||||||| |
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| T |
14242594 |
gtaactgttttgagagctaaatcaaaaagggtaacaactttttcatctgaccaaccatttctataccagt |
14242663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 324 - 560
Target Start/End: Complemental strand, 14370612 - 14370375
Alignment:
| Q |
324 |
caatggaacataattttgtgctattaggtgtctccttaaactcattgacaacacaagttgtgannnnnnnccaaacccatgagattaaaaccaccacaag |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
14370612 |
caatggaacataattttgtgctattaggtgtctccttaaactcattgacaacacaagttgtgatttttttccaaacccatgagattaaaaccgccacaag |
14370513 |
T |
|
| Q |
424 |
caatagtatatgaagtatgctagataacccatgaagaaaaattggttttggaagaaaaacagtatcaaggttcatgggtggaatggaagacaaaataaaa |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14370512 |
caatagtatatgaagtatgctagataacccatgaagaaaaattggttttggaagaaaaacagtatcaaggttcatgggtggaatggaagacaaaataaaa |
14370413 |
T |
|
| Q |
524 |
a-ttggannnnnnncgtttgtgaatgttcggttgtttg |
560 |
Q |
| |
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| ||||| |||||||||||||||||||||||| |
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| T |
14370412 |
aattggatttttttcgtttgtgaatgttcggttgtttg |
14370375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 41453415 - 41453682
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
| |
|
||||||||| || ||| ||||| |||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| | | ||||||| |
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| T |
41453415 |
catcagaaaccaagcattgaactgttaactcgatgtgattttcataaagaacaacaatatcaaccacaaaacaataacatgaaacaaataaaaagaaaac |
41453514 |
T |
|
| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| | |||||||||| ||| ||| ||||| |
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| T |
41453515 |
acaccaagctctaaaaaagaatggaaaccttctttttctttgacctgaactgaagaaaaacaaaaaccctttgtagaaacaaacacaaacaacacaccaa |
41453614 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtatacca |
276 |
Q |
| |
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| ||||||||| | ||||||||||||||| |||||| | ||||||||||||||| |||| |||||||| |
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| T |
41453615 |
gcaactgtttttaaagctaaatcaaaaagagtaacaaccttttcttctgaccaaccactagtatacca |
41453682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 41440252 - 41440521
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
| |
|
||||||||| || ||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||||||||| | ||||||||||||||||| | | | ||||| |
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| T |
41440252 |
catcagaaaccaagcattgaactgttaactcaatgtgattttcatatagaacaacaatatcaaccacagagcaataacatgaaacaaataaaaataaaac |
41440351 |
T |
|
| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||| |||||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| |
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| T |
41440352 |
acaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaaccctttgtggaaacaaacacaaacaacacaccaa |
41440451 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagt |
278 |
Q |
| |
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| ||||||||| | ||||||| |||| |||||| | ||||||||||||||| |||||| |||||||| |
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|
| T |
41440452 |
gcaactgtttttaatactaaatctaaaattgtaacaaccttttcttctgaccaaccacttgcataccagt |
41440521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 341 - 524
Target Start/End: Original strand, 14242744 - 14242927
Alignment:
| Q |
341 |
gtgctattaggtgtctccttaaactcattgacaacacaagttgtgannnnnnnccaaacccatgagattaaaaccaccacaagcaatagtatatgaagta |
440 |
Q |
| |
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||||| || ||| |||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||| || |
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| T |
14242744 |
gtgctgtttggtctctccttacactcattgataacacaagttgtgatttttttccaaacccatgagactaaaaccgaaacaagcaacagtacatgaatta |
14242843 |
T |
|
| Q |
441 |
tgctagataacccatgaagaaaaattggttttggaagaaaaacagtatcaaggttcatgggtggaatggaagacaaaataaaaa |
524 |
Q |
| |
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| ||||||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
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| T |
14242844 |
aggtagataatccatgaaggaaaatgggttttgaaagaaaaacaggatcaaggttcatgagtgtaatggaagacaaaataaaaa |
14242927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 499
Target Start/End: Original strand, 41440603 - 41440757
Alignment:
| Q |
345 |
tattaggtgtctccttaaactcattgacaacacaagttgtgannnnnnnccaaacccatgagattaaaaccaccacaagcaatagtatatgaagtatgct |
444 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| ||||||| | |||||||||||| | |||||| | | || |||||||||||||| || ||| |
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|
| T |
41440603 |
tattaggtttctccttagactcattcacaacaaaagttgtaaattttctccaaacccatgaaactaaaactgcaagaatcaatagtatatgaattaagct |
41440702 |
T |
|
| Q |
445 |
agataacccatgaagaaaaattggttttggaagaaaaacagtatcaaggttcatg |
499 |
Q |
| |
|
||||| ||||||||| ||||| ||||| || |||| |||| ||||||||||| |
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|
| T |
41440703 |
agatatcccatgaaggaaaatgggtttaaaaacaaaatcagttccaaggttcatg |
41440757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 499
Target Start/End: Original strand, 41453839 - 41453914
Alignment:
| Q |
424 |
caatagtatatgaagtatgctagataacccatgaagaaaaattggttttggaagaaaaacagtatcaaggttcatg |
499 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||| ||||| ||||| ||| |||| |||| ||||||||||| |
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|
| T |
41453839 |
caatagtatatgaattaagctagatatcccatgaaggaaaatgggtttaagaacaaaatcagttccaaggttcatg |
41453914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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