View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14126_low_11 (Length: 238)

Name: NF14126_low_11
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14126_low_11
NF14126_low_11
[»] chr7 (4 HSPs)
chr7 (53-220)||(28261773-28261940)
chr7 (168-220)||(41866281-41866333)
chr7 (168-214)||(48918580-48918626)
chr7 (172-220)||(31656847-31656895)
[»] chr8 (7 HSPs)
chr8 (168-220)||(9577690-9577742)
chr8 (168-220)||(13011048-13011100)
chr8 (168-220)||(13117840-13117892)
chr8 (168-220)||(13135576-13135628)
chr8 (168-220)||(18669000-18669052)
chr8 (168-220)||(13009808-13009860)
chr8 (168-214)||(26442034-26442080)
[»] chr5 (3 HSPs)
chr5 (168-220)||(15369478-15369530)
chr5 (168-214)||(16946327-16946373)
chr5 (172-214)||(19732093-19732135)
[»] scaffold0971 (1 HSPs)
scaffold0971 (168-214)||(1361-1407)
[»] chr6 (1 HSPs)
chr6 (168-214)||(29022865-29022911)
[»] chr4 (6 HSPs)
chr4 (168-214)||(23458714-23458760)
chr4 (168-214)||(42636395-42636441)
chr4 (168-214)||(56191458-56191504)
chr4 (168-214)||(56435059-56435105)
chr4 (172-220)||(20916816-20916863)
chr4 (172-220)||(31032755-31032802)
[»] chr2 (2 HSPs)
chr2 (168-214)||(2388810-2388856)
chr2 (172-220)||(35514112-35514159)
[»] chr1 (1 HSPs)
chr1 (168-214)||(45765020-45765066)
[»] scaffold0899 (1 HSPs)
scaffold0899 (172-220)||(2459-2507)
[»] chr3 (2 HSPs)
chr3 (172-220)||(26379289-26379336)
chr3 (172-220)||(29383688-29383735)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 28261940 - 28261773
Alignment:
Q  53 tatgcaaacacgaattaacgtggtttcgttcccctagtcatcagtttacgaaatttttaaactttcttaatttagtgtgaattggtcgtaaaattgcagg 152  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  28261940 tatgcaaacacgaattaacgtggtttcgttcccctagtcatcactttacgaaatttttaaacttgcttaatttactgtgaattggtcgtaaaattgcagg 28261841  T
Q  153 tactataacatctgatttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28261840 tactataacatctggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 28261773  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 41866333 - 41866281
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41866333 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 41866281  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 48918626 - 48918580
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  48918626 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 48918580  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 31656895 - 31656847
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||| ||||| ||||| | ||||||||||||    
T  31656895 gtggtgtagttggttatcacgttagtctcacacactaaaggtccccagt 31656847  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 9577690 - 9577742
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9577690 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 9577742  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 13011100 - 13011048
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13011100 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 13011048  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 13117840 - 13117892
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13117840 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 13117892  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 13135576 - 13135628
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13135576 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 13135628  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 18669052 - 18669000
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18669052 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 18669000  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 13009860 - 13009808
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  13009860 tttcgtggtgtagttggttattacgtcagtctaacacactgaaggtccccagt 13009808  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 26442080 - 26442034
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  26442080 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 26442034  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 15369478 - 15369530
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15369478 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagt 15369530  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 16946373 - 16946327
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  16946373 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 16946327  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 19732135 - 19732093
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  19732135 gtggtgtagttggttatcacgtcagtctaacacactgaaggtc 19732093  T

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Target: scaffold0971 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 1407 - 1361
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1407 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 1361  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 29022865 - 29022911
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29022865 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 29022911  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 23458760 - 23458714
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  23458760 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 23458714  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 42636395 - 42636441
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  42636395 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 42636441  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 56191504 - 56191458
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  56191504 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 56191458  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 56435059 - 56435105
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  56435059 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 56435105  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 20916863 - 20916816
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  20916863 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagt 20916816  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 31032755 - 31032802
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  31032755 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagt 31032802  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 2388810 - 2388856
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2388810 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 2388856  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 35514112 - 35514159
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  35514112 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagt 35514159  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 45765066 - 45765020
Alignment:
Q  168 tttcgtggtgtagttggttatcacgtcagtctaacacattgaaggtc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  45765066 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 45765020  T

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Target: scaffold0899 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 2459 - 2507
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||    
T  2459 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctccagt 2507  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 26379336 - 26379289
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  26379336 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagt 26379289  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 29383688 - 29383735
Alignment:
Q  172 gtggtgtagttggttatcacgtcagtctaacacattgaaggtccccagt 220  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  29383688 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagt 29383735  T

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