View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14126_low_12 (Length: 233)

Name: NF14126_low_12
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14126_low_12
NF14126_low_12
[»] chr4 (2 HSPs)
chr4 (119-214)||(56229430-56229525)
chr4 (12-46)||(56229323-56229357)
[»] chr7 (1 HSPs)
chr7 (153-214)||(39186126-39186187)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 56229430 - 56229525
Alignment:
Q  119 ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56229430 ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatca 56229525  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 56229323 - 56229357
Alignment:
Q  12 aagaatatgatgggataaaatttcaacggaacatc 46  Q
    ||||| |||||||||||||||||||||||||||||    
T  56229323 aagaaaatgatgggataaaatttcaacggaacatc 56229357  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 39186126 - 39186187
Alignment:
Q  153 attgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatca 214  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39186126 attgtaattcagccatgagaaagcaaaagaggcaatgatatattcatacacaaagaatatca 39186187  T

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