View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14126_low_13 (Length: 205)
Name: NF14126_low_13
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14126_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 37831366 - 37831228
Alignment:
| Q |
55 |
atacacggtacatcttaaaccctaataaaaacaaacctctaacaaagctaaacccccacaaacccacatagccaaaagttgaatcaaaacctcataacta |
154 |
Q |
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| T |
37831366 |
atacatggtacatcttaaaccccaataaaaacaaacctctaaccaagctaaacccccacaaacccacatagccaaaagttgaatcaaaacctcataacta |
37831267 |
T |
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| Q |
155 |
catcgcgaatggccacaagaacaaaatctacacacctat |
193 |
Q |
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| T |
37831266 |
catcgcgaatggccacaagaacaaaatctacacacctat |
37831228 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 8133730 - 8133655
Alignment:
| Q |
107 |
cccccacaaacccacatag-ccaaaagttgaatcaaaacctcataactacatcgcgaatggccacaagaacaaaat |
181 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||| |||| |||| |||||||||||| |||||||| |
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| T |
8133730 |
cccccacaaaccaacataaaccaaaagttgagccaaaacctcacaacttcatcatgaatggccacaaaaacaaaat |
8133655 |
T |
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