View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14126_low_3 (Length: 439)
Name: NF14126_low_3
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14126_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 43172826 - 43172417
Alignment:
| Q |
14 |
atcaaattcaggaagagagtctttaccatcataattaccatacacaaaactggcccggagtaaatatttcttgctacttccttgtgaaacaaaaagggtg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43172826 |
atcaaattcaggaagagagtctttaccatcataattaccatacacaaaactggcccggagtaaatatttcttgctactgccttgtgaaacaaaaagggtg |
43172727 |
T |
|
| Q |
114 |
tagcagttcctggttccttctgggaagtttcgaacattccaaaactgtcttttaagggaagccttgtgtttagatgatatgttgttacttacaccagtat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43172726 |
tagcagttcctggttccttctgggaagtttcgaacattccaaaactgtcttttaagggaagccttgtgtttagatgatatgttgttacttacaccagtat |
43172627 |
T |
|
| Q |
214 |
ctttgaagttaacatccgaagtataatagatggaagtagtttcatctgtgtagtttggttcatccactagtccacagtcaatactaatgaatcctgctaa |
313 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43172626 |
ctgtgaagttaacatccgaagtataatagatggaagtaatttcatctgtgtaatttggttcatccactagtccacagtcaatactaatgaatcctgctaa |
43172527 |
T |
|
| Q |
314 |
agaggaaaacgtaagttctaagctacgaagcattcacacaaacactaaccacatgttttgatgtcggacatggacgtgcgttcaatctgaaatgtcggtg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43172526 |
agaggaaaacgtaagttctaagctacgaagcattcaaacagacactaaccacatgttttgatgtcggacatggatgtgcgttcaatctgaaatgtcggtg |
43172427 |
T |
|
| Q |
414 |
ctaaacaatc |
423 |
Q |
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|||||||||| |
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| T |
43172426 |
ctaaacaatc |
43172417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 43163084 - 43162775
Alignment:
| Q |
14 |
atcaaattcaggaagagagtctttaccatcataattaccatacacaaaactggcccggagtaaatatttcttgctacttccttgtgaaacaaaaagggtg |
113 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |
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| T |
43163084 |
atcaaattcaggaagagaatcttttccatcataattaccatacacaaaactggccctgactaaatatttgttgctacttccttgtgaaacaaaaagggtg |
43162985 |
T |
|
| Q |
114 |
tagcagttcctggttccttctgggaagtttcgaacattccaaaactgtcttttaagggaagccttgtgtttagatgatatgttgttacttacaccagtat |
213 |
Q |
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|||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
43162984 |
tagcagttcctggttccttcggggaagcttcttacattccaaaactgtctttcaagggatgccttgtgtttagatgatatgttgtggcttacaccggtat |
43162885 |
T |
|
| Q |
214 |
ctttgaagttaacatccgaagtataatagatggaagtagtttcatctgtgtagtttggttcatccactagtccacagtcaatactaatgaatcctgctaa |
313 |
Q |
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|| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
43162884 |
ctgtgaagttaacatcccaagtgtaatagatggaagtagtttcatctgtgtagcttggttcatccactagtccacagtcaatactaatgaagcctgcaaa |
43162785 |
T |
|
| Q |
314 |
agaggaaaac |
323 |
Q |
| |
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|||||||||| |
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|
| T |
43162784 |
agaggaaaac |
43162775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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