View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14126_low_4 (Length: 422)

Name: NF14126_low_4
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14126_low_4
NF14126_low_4
[»] chr4 (4 HSPs)
chr4 (165-300)||(56228876-56229011)
chr4 (12-108)||(51268324-51268421)
chr4 (331-422)||(56229147-56229240)
chr4 (56-105)||(51268472-51268521)
[»] chr8 (4 HSPs)
chr8 (12-110)||(29739907-29740005)
chr8 (12-108)||(10756450-10756546)
chr8 (56-108)||(10756597-10756649)
chr8 (56-108)||(29740056-29740108)
[»] chr6 (8 HSPs)
chr6 (12-109)||(17193843-17193940)
chr6 (12-109)||(25054438-25054535)
chr6 (12-109)||(30780268-30780365)
chr6 (12-108)||(3962538-3962634)
chr6 (54-108)||(17193740-17193794)
chr6 (56-110)||(25054586-25054640)
chr6 (56-108)||(3962685-3962737)
chr6 (56-108)||(30780416-30780468)
[»] chr5 (5 HSPs)
chr5 (12-113)||(11772736-11772837)
chr5 (12-108)||(17534648-17534744)
chr5 (56-109)||(8881021-8881074)
chr5 (56-113)||(11772888-11772945)
chr5 (56-108)||(17534545-17534597)
[»] chr3 (4 HSPs)
chr3 (12-109)||(34630588-34630684)
chr3 (29-108)||(46906240-46906319)
chr3 (56-107)||(34630735-34630786)
chr3 (58-108)||(22899519-22899569)
[»] chr7 (1 HSPs)
chr7 (30-108)||(43406290-43406368)
[»] chr2 (1 HSPs)
chr2 (58-110)||(18900622-18900674)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 56228876 - 56229011
Alignment:
Q  165 atatatttttaagatgattaatagcttgtttggaactaccgtaaactttgtattttcccattttgagacaattttcgcagtgaaaaatagaagctacaca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  56228876 atatatttttaagatgattaatagcttgtttggaactaccgtaaactttgtattttcccattttgagacaatttttgcagtgaaaaatagaagctacaca 56228975  T
Q  265 atgtggcttctgatttatcgtatgtctacattgtgg 300  Q
    ||||||||||||||||||||||||||||||||||||    
T  56228976 atgtggcttctgatttatcgtatgtctacattgtgg 56229011  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 51268421 - 51268324
Alignment:
Q  12 atgaaattgaagtgtattaaaaatt-ggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  51268421 atgaaattgaaatgtattaaaaatttggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 56229147 - 56229240
Alignment:
Q  331 ttgaaagagaggaaaagagaagttggtacaa-catattagag-tttaggaggtgtttacttgaagaaaattagatttacttctaggaatcatat 422  Q
    ||||||||||  ||||||||||||||||||| |||||| ||| |||||| |||||||| |||||| ||||||||||||||||||||||| ||||    
T  56229147 ttgaaagagaaaaaaagagaagttggtacaaacatattcgagctttaggtggtgtttatttgaagtaaattagatttacttctaggaataatat 56229240  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 51268472 - 51268521
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcattt 105  Q
    ||||||||||||||  |||||||| ||||||| ||||||| |||||||||    
T  51268472 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 51268521  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 29740005 - 29739907
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctcta 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||||    
T  29740005 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 29739907  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 10756546 - 10756450
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  10756546 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 10756597 - 10756649
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  10756597 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756649  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 29740056 - 29740108
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  29740056 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 29740108  T

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Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 17193843 - 17193940
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctct 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| |||||||||||||    
T  17193843 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 17193940  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 25054535 - 25054438
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctct 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| |||||||||||||    
T  25054535 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 25054438  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 30780365 - 30780268
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctct 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| |||||||||||||    
T  30780365 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 30780268  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 3962634 - 3962538
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  3962634 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 17193794 - 17193740
Alignment:
Q  54 tattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  17193794 tattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17193740  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 25054586 - 25054640
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctcta 110  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||||    
T  25054586 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 25054640  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 3962685 - 3962737
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  3962685 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962737  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 30780416 - 30780468
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  30780416 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 30780468  T

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Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 11772837 - 11772736
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctctag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| |||||||||||| ||    
T  11772837 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcaag 11772738  T
Q  112 gc 113  Q
    ||    
T  11772737 gc 11772736  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 17534648 - 17534744
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  17534648 atgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534744  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 8881074 - 8881021
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctct 109  Q
    ||||||||||||||  |||||||| ||||||| ||||||| |||||||||||||    
T  8881074 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881021  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 11772888 - 11772945
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctctaggc 113  Q
    ||||||||||||||  |||||||| ||||||| ||||||| |||||||||||| ||||    
T  11772888 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcaaggc 11772945  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 17534597 - 17534545
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  17534597 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534545  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 34630684 - 34630588
Alignment:
Q  12 atgaaattgaagtgtattaaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctct 109  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||||| ||||||| ||||||| |||||||||||||    
T  34630684 atgaaattgaaatgtattaaaaattggg-tgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 34630588  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 46906240 - 46906319
Alignment:
Q  29 taaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  46906240 taaaaaattgggtgaggtggcttcctattattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 34630735 - 34630786
Alignment:
Q  56 ttattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttct 107  Q
    ||||||||||||||  |||||||| ||||||| ||||||| |||||||||||    
T  34630735 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 34630786  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  58 attggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    ||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 43406290 - 43406368
Alignment:
Q  30 aaaaattggggtgaggtggcttcctattattggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctc 108  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||    
T  43406290 aaaaattgaggtgaggtggcttcctattattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 18900674 - 18900622
Alignment:
Q  58 attggagtgtgtaaaaagagtgagtttgagggtttgtctttagcatttctcta 110  Q
    ||||||| |||| ||||||||| ||||||| || |||| ||||||||||||||    
T  18900674 attggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctcta 18900622  T

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