View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14126_low_5 (Length: 366)
Name: NF14126_low_5
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14126_low_5 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 85 - 349
Target Start/End: Complemental strand, 1034273 - 1034009
Alignment:
| Q |
85 |
aacaaatttgcaaggagaaaaagcttattaaatatggaggttccacttccgaccttggatgctacaatacaacattgttttcttcattggagaaagggat |
184 |
Q |
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| T |
1034273 |
aacaaatttgcaaggagaaaaaacttattaaatatggaggttccacttccaaccttggatgctacaatacaacattgttttcttcattcaagaaagggat |
1034174 |
T |
|
| Q |
185 |
agtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctctttggcaaatctggatt |
284 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1034173 |
agtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggatt |
1034074 |
T |
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| Q |
285 |
tgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccat |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034073 |
cgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccat |
1034009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 137 - 347
Target Start/End: Complemental strand, 1044608 - 1044398
Alignment:
| Q |
137 |
ccttggatgctacaatacaacattgttttcttcattggagaaagggatagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttata |
236 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||| ||||||| ||||||| |||||||||||||||| ||||| |
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| T |
1044608 |
ccttggatgctgcaatacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattata |
1044509 |
T |
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| Q |
237 |
tttattgagaggagcgtttagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctata |
336 |
Q |
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| T |
1044508 |
cttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaactacaagatctgccttgttttcagctata |
1044409 |
T |
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| Q |
337 |
gcattgatccc |
347 |
Q |
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|||| |||||| |
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| T |
1044408 |
gcatcgatccc |
1044398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 163 - 349
Target Start/End: Complemental strand, 1066197 - 1066011
Alignment:
| Q |
163 |
tttcttcattggagaaagggatagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaa |
262 |
Q |
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|||||||||| |||||||| ||||| |||||||||| ||| | ||||||| ||||||| ||||||||||||||||| || |||||||| | ||||||| |
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| T |
1066197 |
tttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaa |
1066098 |
T |
|
| Q |
263 |
atctctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccat |
349 |
Q |
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| T |
1066097 |
atctctttggtaaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccat |
1066011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 152 - 349
Target Start/End: Complemental strand, 1059116 - 1058919
Alignment:
| Q |
152 |
tacaacattgttttcttcattggagaaagggatagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttattgagaggagc |
251 |
Q |
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||||||| || |||||||||| ||||| || ||||| |||||||||| ||| | ||| ||||||||||||||| |||||||||| || || |||||||| |
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| T |
1059116 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagc |
1059017 |
T |
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| Q |
252 |
gtttagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccat |
349 |
Q |
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|| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||| |||||| || ||||| ||||||||||||| |
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| T |
1059016 |
attaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccat |
1058919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 184 - 349
Target Start/End: Complemental strand, 1053819 - 1053654
Alignment:
| Q |
184 |
tagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctctttggcaaatctggat |
283 |
Q |
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||||| |||||||||| ||| | |||||||||||||||||||||||| ||||| || || |||||||| || ||||||||||||||||| |||||||||| |
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| T |
1053819 |
tagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggat |
1053720 |
T |
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| Q |
284 |
ttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccat |
349 |
Q |
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| | || |||||||||||||||| ||| ||||||||||||||| || |||||||||||||| |||| |
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| T |
1053719 |
tagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgattccat |
1053654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 166 - 349
Target Start/End: Complemental strand, 1071921 - 1071738
Alignment:
| Q |
166 |
cttcattggagaaagggatagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatc |
265 |
Q |
| |
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||||||| ||||| || ||||| |||||||||| ||| | ||||||| ||| ||||||||||||||||| || || |||||||| | |||||||||| |
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| T |
1071921 |
cttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatc |
1071822 |
T |
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| Q |
266 |
tctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccat |
349 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||| || || ||||| ||||||||||||| |
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| T |
1071821 |
tctttggcaaatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccat |
1071738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 347
Target Start/End: Complemental strand, 1047189 - 1046984
Alignment:
| Q |
143 |
atgctacaa-tacaacattgttttcttcattggagaaagggatagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttat |
241 |
Q |
| |
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||||||||| |||||||| ||| |||||| ||||| || ||||| |||||||| | ||| | |||||||||| ||||||||||| | ||||| || | |
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| T |
1047189 |
atgctacaagtacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgt |
1047090 |
T |
|
| Q |
242 |
tgagaggagcgtttagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcatt |
341 |
Q |
| |
|
| || ||||| || ||||||||||||||||||||||||||||| |||| ||| ||||| | ||| ||||||||||| ||||||| || ||||||||||| |
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| T |
1047089 |
ttaggggagcattaagtgcaaatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcatt |
1046990 |
T |
|
| Q |
342 |
gatccc |
347 |
Q |
| |
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|||||| |
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| T |
1046989 |
gatccc |
1046984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 319
Target Start/End: Original strand, 1640373 - 1640517
Alignment:
| Q |
175 |
agaaagggatagtccgtataacctacaaccgcatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctctttggca |
274 |
Q |
| |
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||||| || ||||| |||||||| | ||||| |||||| ||||||||||| |||| |||||| || ||||||||||| | || || ||||||||||| | |
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| T |
1640373 |
agaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggta |
1640472 |
T |
|
| Q |
275 |
aatctggatttgctaagaacaaacgaccataaacaacaagatctg |
319 |
Q |
| |
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|||||||||| | || ||||| ||||||||| |||||||||||| |
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| T |
1640473 |
aatctggattagatataaacaagcgaccataagcaacaagatctg |
1640517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
| Q |
258 |
tgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcatt |
341 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
65937 |
tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt |
65854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 12121338 - 12121406
Alignment:
| Q |
258 |
tgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaacaacaagatctgccctatt |
326 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
12121338 |
tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttatt |
12121406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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