View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14126_low_6 (Length: 294)

Name: NF14126_low_6
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14126_low_6
NF14126_low_6
[»] chr8 (5 HSPs)
chr8 (16-277)||(44122479-44122741)
chr8 (151-219)||(44143300-44143368)
chr8 (49-111)||(24197831-24197893)
chr8 (22-111)||(32778531-32778623)
chr8 (47-104)||(39709634-39709691)
[»] chr2 (4 HSPs)
chr2 (45-111)||(816405-816471)
chr2 (47-111)||(39417503-39417567)
chr2 (13-111)||(18741401-18741502)
chr2 (47-111)||(22999136-22999200)
[»] chr4 (4 HSPs)
chr4 (13-74)||(50032249-50032313)
chr4 (47-111)||(24478456-24478520)
chr4 (13-112)||(38944383-38944485)
chr4 (65-111)||(50981733-50981779)
[»] scaffold0160 (1 HSPs)
scaffold0160 (47-111)||(22143-22207)
[»] chr1 (2 HSPs)
chr1 (47-111)||(37186820-37186884)
chr1 (47-111)||(35068935-35068999)
[»] chr7 (4 HSPs)
chr7 (13-111)||(8037568-8037669)
chr7 (47-105)||(6328183-6328241)
chr7 (65-111)||(36251729-36251775)
chr7 (47-111)||(4887517-4887580)
[»] chr3 (3 HSPs)
chr3 (48-111)||(4659600-4659663)
chr3 (59-111)||(50735880-50735932)
chr3 (59-111)||(50776923-50776975)
[»] chr5 (3 HSPs)
chr5 (65-111)||(24406642-24406688)
chr5 (13-89)||(26526537-26526616)
chr5 (47-111)||(10083932-10083996)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 44122741 - 44122479
Alignment:
Q  16 ataccgaaattattatgttgaacgtcatgat---ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctatt 112  Q
    |||| |||||||||||| |||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44122741 atactgaaattattatgctgaacgtcatgattagggttcgaactctgatacctccactttatgtgtgtaagtttatgctggctttgacatctcgtctatt 44122642  T
Q  113 nnnnnnnngttgtaccattgaagcaaaacatgaatgtggttctttaagataacgtggcaatgtagactccactaaactatacatttgggttgcaccattg 212  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44122641 aaaaaaaagttgtaccattgaagcaaaacatgaatgtggttctttaagataacgtggcaatgtagactccactaaactatacatttgggttgcaccattg 44122542  T
Q  213 aaggtgctcaaaaggatnnnnnnnnntgtaatttatcctattgtttatttaatgagatggggagg 277  Q
    |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  44122541 aaggtgctcaaaaggat--aaaaaaatgtaatttatcctattgtttatttaatgagatggggagg 44122479  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 44143368 - 44143300
Alignment:
Q  151 gttctttaagataacgtggcaatgtagactccactaaactatacatttgggttgcaccattgaaggtgc 219  Q
    |||||||||||| | ||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  44143368 gttctttaagatgatgtggcaatgtagactccactaagagatacatttgggttgcaccattgaaggtgc 44143300  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 24197893 - 24197831
Alignment:
Q  49 ttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||| ||||| |||||||||||||||| |||||||| ||| |||| |||||| |||||    
T  24197893 ttcgaactccgatacctccactttatgtgtgtgagtttatgatggttttgtcatctcttctat 24197831  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 32778531 - 32778623
Alignment:
Q  22 aaattattatgttgaacgtcatgat---ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||| || | ||||||||||   |||| |||||| ||||| |||||||| |||||||  ||||||| |||||||| ||||||||||||    
T  32778531 aaattattaagtcgtacgtcatgatcggggtttgaactccgatacctccactttgtgtgtgtgggtttatgatggctttgtcatctcgtctat 32778623  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 39709691 - 39709634
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatct 104  Q
    ||||| ||||||||||| |||||||||| ||||| |||||||| ||| |||| |||||    
T  39709691 ggttcaaactctgatacctccactttatatgtgtgagtttatgatggttttgccatct 39709634  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 816405 - 816471
Alignment:
Q  45 atggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||||| | | |||||||||||| ||||||| |||||||| ||| |||| ||||||||||||    
T  816405 atggttcgaaccccggtacatccactttgtgtgtgtgagtttatgatggttttgccatctcgtctat 816471  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 39417503 - 39417567
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||||| ||||  |||||||||||||||| |||||||| || ||||  ||||||||||||    
T  39417503 ggttcgaactccgatatctccactttatgtgtgtgagtttatgatgactttatcatctcgtctat 39417567  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 18741502 - 18741401
Alignment:
Q  13 aaaataccgaaattattatgttgaacgtcatgat---ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtct 109  Q
    ||||| |||||||| ||| || |||| |||||||   ||||| ||||| | ||| |||||||| ||||||| |||||||| || ||||| ||||||||||    
T  18741502 aaaatgccgaaattgttaggtcgaacatcatgatcgaggttcaaactccggtacctccactttgtgtgtgtgagtttatgatgactttgtcatctcgtct 18741403  T
Q  110 at 111  Q
    ||    
T  18741402 at 18741401  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 22999136 - 22999200
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||| | || || |||||||| ||||||| |||||||| ||| |||| ||||||||||||    
T  22999136 ggttcgaaccccgacacctccactttgtgtgtgtgagtttatgatggttttgtcatctcgtctat 22999200  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 50032313 - 50032249
Alignment:
Q  13 aaaataccgaaattattatgttgaacgtcatga-tg--gttcgaactctgatacatccactttat 74  Q
    |||||||||||||||||||| || ||||||||| ||  |||||||||||||||| ||||||||||    
T  50032313 aaaataccgaaattattatgctggacgtcatgactggagttcgaactctgatacctccactttat 50032249  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 24478520 - 24478456
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||||||||||| |||||||||| |||||  ||||||| ||| |||| |||||| |||||    
T  24478520 ggttcgaactctgatacctccactttatatgtgtgggtttatgatggttttgtcatctcctctat 24478456  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 38944485 - 38944383
Alignment:
Q  13 aaaataccgaaattattatgttgaacgtcatga---tggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtct 109  Q
    |||||| ||||||| ||| |||| |||||| ||   |||||||||| |  |||| |||||||||||| ||| |||||||| ||| |||| ||||||||||    
T  38944485 aaaatatcgaaattgttaggttggacgtcaagaccctggttcgaaccccaatacctccactttatgtatgtgagtttatgatggttttgtcatctcgtct 38944386  T
Q  110 att 112  Q
    |||    
T  38944385 att 38944383  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 50981779 - 50981733
Alignment:
Q  65 tccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    |||||||| ||||||| |||||||| ||||||||||||||| |||||    
T  50981779 tccactttgtgtgtgtgagtttatgatggctttgacatctcttctat 50981733  T

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Target: scaffold0160 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 22143 - 22207
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||| | ||||| |||||||| ||||||| |||||||| || ||||| ||||||||||||    
T  22143 ggttcgaaccccgatacctccactttgtgtgtgtgagtttatgatgactttgtcatctcgtctat 22207  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 37186884 - 37186820
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||||||| ||| |||||||| ||||| | |||||||| |||||||| |||||| |||||    
T  37186884 ggttcgaactctggtacctccactttgtgtgtttgagtttatgatggctttgtcatctcttctat 37186820  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 35068935 - 35068999
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    |||||||| ||  |||| |||||||| ||||||| ||||||||  ||||||| ||||||||||||    
T  35068935 ggttcgaattccaatacctccactttgtgtgtgtgagtttatgacggctttgccatctcgtctat 35068999  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 8037568 - 8037669
Alignment:
Q  13 aaaataccgaaattattatgttgaacgtcatgat---ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtct 109  Q
    |||||||||||||||||| |||| ||||||||||    ||||||||||   ||| |||| ||||||||| | |||||||| ||  |||| ||||||||||    
T  8037568 aaaataccgaaattattaggttggacgtcatgatcggagttcgaactccagtacctccattttatgtgtatgagtttatgatgattttgccatctcgtct 8037667  T
Q  110 at 111  Q
    ||    
T  8037668 at 8037669  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 6328241 - 6328183
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctc 105  Q
    ||||||||| | ||||| |||||||||||||||| |||||||| ||| |||| ||||||    
T  6328241 ggttcgaaccccgatacctccactttatgtgtgtgagtttatgatggttttgtcatctc 6328183  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 36251729 - 36251775
Alignment:
Q  65 tccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    |||||||||||||||| |||||||| ||| |||| ||||||||||||    
T  36251729 tccactttatgtgtgtgagtttatgatggttttgccatctcgtctat 36251775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 4887580 - 4887517
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||| ||||||||||||| || ||||||| |||||||  |||||||| ||| ||||||||    
T  4887580 ggttcgaaccctgatacatccac-ttgtgtgtgtgagtttataatggctttgccatttcgtctat 4887517  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 4659600 - 4659663
Alignment:
Q  48 gttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    |||||||| ||||||| |||||||||||||||| |||||||  || ||||  ||||||||||||    
T  4659600 gttcgaaccctgatacctccactttatgtgtgtgagtttataatgactttttcatctcgtctat 4659663  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 50735880 - 50735932
Alignment:
Q  59 gatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||| |||| |||||||||||||||||| | || ||||| ||||||||||||    
T  50735880 gatacctccattttatgtgtgtaagtttacgatgactttgtcatctcgtctat 50735932  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 50776975 - 50776923
Alignment:
Q  59 gatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||| |||| |||||||||||||||||| | || ||||| ||||||||||||    
T  50776975 gatacctccattttatgtgtgtaagtttacgatgactttgtcatctcgtctat 50776923  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 24406642 - 24406688
Alignment:
Q  65 tccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||||    
T  24406642 tccactttgtgtgtgtatgtttatgatggctttgccatctcgtctat 24406688  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 26526537 - 26526616
Alignment:
Q  13 aaaataccgaaattattatgttgaacgtcatgat---ggttcgaactctgatacatccactttatgtgtgtaagtttatg 89  Q
    |||||||||||||| ||| |  |||||||||||    ||||||||||| | ||| |||||||||||||||| ||||||||    
T  26526537 aaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtgtgagtttatg 26526616  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 10083996 - 10083932
Alignment:
Q  47 ggttcgaactctgatacatccactttatgtgtgtaagtttatgttggctttgacatctcgtctat 111  Q
    ||||||||||| | ||  |||||||| |||||||||||||||| || ||||| | ||||||||||    
T  10083996 ggttcgaactccggtagctccactttgtgtgtgtaagtttatgatgactttgccctctcgtctat 10083932  T

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