View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14126_low_8 (Length: 271)

Name: NF14126_low_8
Description: NF14126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14126_low_8
NF14126_low_8
[»] chr2 (7 HSPs)
chr2 (28-251)||(33072135-33072367)
chr2 (105-193)||(33081866-33081954)
chr2 (105-139)||(33091780-33091814)
chr2 (105-139)||(33099276-33099310)
chr2 (28-77)||(33082059-33082108)
chr2 (28-77)||(33091919-33091968)
chr2 (28-77)||(33099415-33099464)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 33072367 - 33072135
Alignment:
Q  28 gctattacggcctggatttgaaggttgtaaggaaggttttcgtaatggtaaggtaagaaaatatctataaatttcaatg---------gtatacttgctt 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||||||||||    
T  33072367 gctattacggcctggatttgaaggtcgtaaggaaggttttcgtaatggtaaggcaagaaaatatctataaatttcaatgtctggtttggtatacttgctt 33072268  T
Q  119 acatttatcaatttatgtttcnnnnnnncaatcccatgatatatgttatgaattatgcaccccttttgaaattcttgacattctagcattttgttacatc 218  Q
    | |||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33072267 atatttatcaatttatgtttctttttttcaatcccatgatatatgttaagaattatgcaccccttttgaaattcttgaaattctagcattttgttacatc 33072168  T
Q  219 atgtatgttggtatgtcaatattaatgtacaca 251  Q
    |||||||| ||||||||||||||||||||||||    
T  33072167 atgtatgtcggtatgtcaatattaatgtacaca 33072135  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 33081954 - 33081866
Alignment:
Q  105 tggtatacttgcttacatttatcaatttatgtttcnnnnnnncaatcccatgatatatgttatgaattatgcaccccttttgaaattct 193  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||    ||||||||| |||||||||||||||    
T  33081954 tggtatacttgcttacatttatcaatttatgtttcttcttttcaatcccatgatatatgtcgcaaattatgcagcccttttgaaattct 33081866  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 33091814 - 33091780
Alignment:
Q  105 tggtatacttgcttacatttatcaatttatgtttc 139  Q
    |||||||||||||||||||||||||||||||||||    
T  33091814 tggtatacttgcttacatttatcaatttatgtttc 33091780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 33099310 - 33099276
Alignment:
Q  105 tggtatacttgcttacatttatcaatttatgtttc 139  Q
    |||||||||||||||||||||||||||||||||||    
T  33099310 tggtatacttgcttacatttatcaatttatgtttc 33099276  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 33082108 - 33082059
Alignment:
Q  28 gctattacggcctggatttgaaggttgtaaggaaggttttcgtaatggta 77  Q
    |||||||  |||||||||||||||| |||||||||| |||| ||||||||    
T  33082108 gctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggta 33082059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 33091968 - 33091919
Alignment:
Q  28 gctattacggcctggatttgaaggttgtaaggaaggttttcgtaatggta 77  Q
    |||||||  |||||||||||||||| |||||||||| |||| ||||||||    
T  33091968 gctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggta 33091919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 33099464 - 33099415
Alignment:
Q  28 gctattacggcctggatttgaaggttgtaaggaaggttttcgtaatggta 77  Q
    |||||||  |||||||||||||||| |||||||||| |||| ||||||||    
T  33099464 gctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggta 33099415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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