View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14127_high_2 (Length: 593)
Name: NF14127_high_2
Description: NF14127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14127_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 372
Target Start/End: Complemental strand, 47298613 - 47298258
Alignment:
| Q |
21 |
tgtgctatataattataatgaaagacctgtttgttattgtgatatattaactagtatataggttttcatattataattctgtcagcccctattctttgtt |
120 |
Q |
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| T |
47298613 |
tgtgctatataatgataatgaaagacctgtttgttattgtgatatattaactagtatataggttttcatattataattctgtcagcccctattctttgtt |
47298514 |
T |
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| Q |
121 |
gttattattttcggctgttttatttagccttaggttgctttgcatctgttttagtctcttaattaggcccagttgattataccnnnnnnnngtattg--- |
217 |
Q |
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| T |
47298513 |
tttattattttcggctgttttatttagccttaggctgctttgcatctgttttagtctcttaattaggcccagttgattataccctttttttgtattgact |
47298414 |
T |
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| Q |
218 |
-atttggtcaaaattagagaagtaagtttttgttagtatggctcggttctattcaaatctgttagagaggagagaagggaacgatgctacaacctttgaa |
316 |
Q |
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| T |
47298413 |
taattagtcaaaattagagaagtaagtttttgttagtatggcacggttctattcaaatctgttagagaggagagaagggaatgatgctacaacctttgaa |
47298314 |
T |
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| Q |
317 |
gtttgaaccatatatataacaaatcctccttttttatattcaagtgatcaagtttt |
372 |
Q |
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| T |
47298313 |
gtttgaaccatatatataacaaatcctccttttttatattcaagtgatcaagtttt |
47298258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 371 - 560
Target Start/End: Complemental strand, 47297891 - 47297703
Alignment:
| Q |
371 |
ttacttgttttgataattgtttcgatttagttcatgttgacattttgggacctttttctattccttccatatatcgtcagagacactttcttacta---n |
467 |
Q |
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| T |
47297891 |
ttacttgttttgataattgtttcgatttagttcatgttgacattttgggacctttttctattccttccatatatcgtcacagacactttcttactatttt |
47297792 |
T |
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| Q |
468 |
nnnnnnnnggtaaaaacactttcttactattggacactttttgacattttggacactttcttactattgttcccacacataccgactctccta |
560 |
Q |
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| T |
47297791 |
tttttgttggtaaaaaca----cttactattggacactttttgacattttggacactttcttactattgttcccacacataccgactctccta |
47297703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 47291790 - 47291648
Alignment:
| Q |
223 |
gtcaaaattagagaagtaagtttttgttagtatggctcggttctattcaaatctgttagagaggagagaagggaacgatgctacaacctttgaagtttga |
322 |
Q |
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| T |
47291790 |
gtcaaaattagagaagtaagtttttgttagtatggcacggttgtattcaaatctgttagagaggatagaagggaatgatgctacatcc-------tttga |
47291698 |
T |
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| Q |
323 |
accatatatataacaaatcctccttttttatattcaagtgatcaagtttt |
372 |
Q |
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|||| ||||||||||||| || |||| |||||||| |||||||||||| |
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| T |
47291697 |
gccatctatataacaaatcgccccttttcatattcaattgatcaagtttt |
47291648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 47292014 - 47291856
Alignment:
| Q |
21 |
tgtgctatataattataatgaaagacctgtttgttattgtgatatattaactagtatataggttttcatattataattctgtcagcccctattctttgtt |
120 |
Q |
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||||||||||||| |||||||||| ||| || ||| || ||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
47292014 |
tgtgctatataatgataatgaaaggcctatt-gtttgtgagatatattaactagtatctaggatttaatattataattctatcagcccctattctttgtt |
47291916 |
T |
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| Q |
121 |
gttattattttcggctgtttta-----tttagccttaggttgctttgcatctgttttagt |
175 |
Q |
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| T |
47291915 |
tttattattatcagctgttttatttaatttagccttaggctgctttgcatctgttttagt |
47291856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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