View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14127_high_4 (Length: 431)
Name: NF14127_high_4
Description: NF14127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14127_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 50941495 - 50941324
Alignment:
| Q |
1 |
acaaatcatcaaaaatatcaattttaaccttttttaaactaacccagttcacatcatcaaatgcttgtttctcttttaacaatataagtctgattaccga |
100 |
Q |
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| T |
50941495 |
acaaatcatcaaaaatatcaattttaaccttttttaaattaacccagttcacatcatcaaatgcttgtttctcttttaacaatataagtctgattaccga |
50941396 |
T |
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| Q |
101 |
cttcatcacaaaacttcctattctcatgcttcgaaacctannnnnnnnggagggattatgcttcgaaaccttt |
173 |
Q |
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| T |
50941395 |
cttcatcacacaacttcctattctcatgcttcgaaaccta-tttttttggagggattatgcttcgaaaccttt |
50941324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 50941265 - 50941116
Alignment:
| Q |
171 |
tttttcctaaacacattaacactagattaggttttgaattcccttatcaaaagaaaagaatggagttttggaaaaattcatcgtatgattacttttcatg |
270 |
Q |
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| T |
50941265 |
ttttttcttaacacattaagactagattaggttttgaattcccttatcaaaagaaaagaatggagttttggaaaaattcatcatatgattacttttcatg |
50941166 |
T |
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| Q |
271 |
ttatcaagacaaagagagactactcactcatcatagtaatgagctatctc |
320 |
Q |
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| T |
50941165 |
ttatcaagacaaagagagactactcactcatcatagtaatgagctatctc |
50941116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 50941066 - 50941009
Alignment:
| Q |
370 |
aagtacaactacaagagatctatgatgaaacgtcgtgtgaaacaaaggttaggcttgc |
427 |
Q |
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| T |
50941066 |
aagtacaactacaaaagatctatgatgaaacgtcgtgtgaaacaaaggttaggcttgc |
50941009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1699881 - 1699848
Alignment:
| Q |
1 |
acaaatcatcaaaaatatcaattttaaccttttt |
34 |
Q |
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| T |
1699881 |
acaaaccatcaaaaatatcaattttaaccttttt |
1699848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 3263404 - 3263350
Alignment:
| Q |
261 |
acttttcatgttatcaagacaaagagagactactcactcatcatagtaatgagct |
315 |
Q |
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| T |
3263404 |
actttccatgatctcaagataaagagagactactcactaatcatagtgatgagct |
3263350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33568097 - 33568130
Alignment:
| Q |
1 |
acaaatcatcaaaaatatcaattttaaccttttt |
34 |
Q |
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| T |
33568097 |
acaaatcattaaaaatatcaattttaaccttttt |
33568130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 27504497 - 27504529
Alignment:
| Q |
275 |
caagacaaagagagactactcactcatcatagt |
307 |
Q |
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| T |
27504497 |
caagacaaaaagagactactcactcatcatagt |
27504529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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