View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14127_low_1 (Length: 871)

Name: NF14127_low_1
Description: NF14127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14127_low_1
NF14127_low_1
[»] chr2 (7 HSPs)
chr2 (11-344)||(35796100-35796434)
chr2 (581-856)||(35796483-35796753)
chr2 (611-687)||(36071561-36071637)
chr2 (620-677)||(43559214-43559271)
chr2 (194-258)||(20203731-20203795)
chr2 (175-268)||(27464579-27464672)
chr2 (180-253)||(31995139-31995212)
[»] chr7 (12 HSPs)
chr7 (612-686)||(41826237-41826311)
chr7 (168-268)||(7447914-7448014)
chr7 (173-268)||(20401039-20401134)
chr7 (194-268)||(3942240-3942314)
chr7 (174-268)||(26719859-26719953)
chr7 (194-268)||(35543563-35543637)
chr7 (175-249)||(10096516-10096590)
chr7 (168-266)||(33124733-33124831)
chr7 (174-268)||(33898951-33899045)
chr7 (168-266)||(43052910-43053008)
chr7 (173-266)||(388989-389082)
chr7 (194-267)||(45176309-45176382)
[»] chr4 (15 HSPs)
chr4 (611-685)||(33589090-33589164)
chr4 (609-681)||(33583342-33583414)
chr4 (194-266)||(48731182-48731254)
chr4 (194-268)||(9469836-9469910)
chr4 (194-268)||(36543840-36543914)
chr4 (168-268)||(48339106-48339206)
chr4 (168-266)||(19853011-19853109)
chr4 (174-266)||(12673037-12673129)
chr4 (168-268)||(27891420-27891519)
chr4 (168-268)||(36156301-36156401)
chr4 (173-268)||(15697090-15697185)
chr4 (174-253)||(34980526-34980605)
chr4 (198-257)||(39736746-39736805)
chr4 (174-268)||(24007910-24008004)
chr4 (175-268)||(49083241-49083334)
[»] chr1 (13 HSPs)
chr1 (612-686)||(26918762-26918836)
chr1 (620-687)||(36003019-36003086)
chr1 (620-677)||(33351060-33351117)
chr1 (196-266)||(20347727-20347797)
chr1 (174-266)||(40159639-40159731)
chr1 (174-265)||(5204479-5204570)
chr1 (168-266)||(35810751-35810849)
chr1 (173-266)||(42937112-42937205)
chr1 (174-266)||(28006389-28006481)
chr1 (194-253)||(11991331-11991390)
chr1 (177-268)||(31816610-31816701)
chr1 (175-266)||(44596557-44596648)
chr1 (174-268)||(15257178-15257272)
[»] chr8 (4 HSPs)
chr8 (620-687)||(4271483-4271550)
chr8 (173-266)||(43384832-43384925)
chr8 (175-266)||(39478090-39478181)
chr8 (168-265)||(27189092-27189189)
[»] chr3 (14 HSPs)
chr3 (620-686)||(49918005-49918071)
chr3 (168-268)||(33438738-33438838)
chr3 (168-268)||(46293220-46293320)
chr3 (194-266)||(19560783-19560855)
chr3 (174-268)||(30662138-30662232)
chr3 (168-258)||(39135387-39135477)
chr3 (173-266)||(25253740-25253833)
chr3 (168-253)||(39469553-39469638)
chr3 (174-266)||(12710741-12710833)
chr3 (174-266)||(26049549-26049641)
chr3 (168-268)||(52199462-52199562)
chr3 (194-269)||(47782127-47782202)
chr3 (168-266)||(9505130-9505228)
chr3 (168-266)||(54393452-54393550)
[»] chr5 (10 HSPs)
chr5 (177-268)||(31620910-31621001)
chr5 (168-266)||(3801373-3801471)
chr5 (173-266)||(15933201-15933294)
chr5 (174-266)||(34857386-34857478)
chr5 (174-268)||(27196116-27196210)
chr5 (194-266)||(38522870-38522942)
chr5 (187-268)||(43386768-43386851)
chr5 (173-268)||(31021901-31021996)
chr5 (194-268)||(27876102-27876176)
chr5 (174-268)||(32945028-32945122)
[»] chr6 (3 HSPs)
chr6 (625-686)||(6282883-6282944)
chr6 (168-266)||(10961805-10961903)
chr6 (194-256)||(8596855-8596917)
[»] scaffold0022 (1 HSPs)
scaffold0022 (173-266)||(124490-124583)
[»] scaffold0260 (1 HSPs)
scaffold0260 (196-266)||(10050-10120)
[»] scaffold0204 (1 HSPs)
scaffold0204 (168-268)||(26628-26728)
[»] scaffold0223 (1 HSPs)
scaffold0223 (174-268)||(14465-14559)
[»] scaffold0171 (1 HSPs)
scaffold0171 (194-268)||(21146-21220)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 35796100 - 35796434
Alignment:
Q  11 cgaagaatatgagaggaaacaacctgaatatctgattaaaaacagttgtgtcaacggttacaaagacgaattgagaccgcaactgtannnnnnnna-ggg 109  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||          |||    
T  35796100 cgaaaaatatgagaggaaacaacctggatacctgattaaaaacagttgtgccaacggttacgaagacgaattgagaccgtaactgtattttttttttggg 35796199  T
Q  110 atcgcaactgcattcttaaacgcctgtaaagcactataggagtctttaaatatgtaaatttctgctcaagttcaacccattagattcatgaaccaaattc 209  Q
    | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  35796200 accgcaactgcattcttaaacgcttgtaaagcactagaggagtctttaaatatgtaaatttctgctcaagttcaacccgttagattcatgaaccaagttc 35796299  T
Q  210 aatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcgggtctaattttaaggacttcggttttgaaattgtttttct 309  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |  | | ||||||||||||||||||    
T  35796300 aatgaatcaactgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcgggcctaatgttaagtaggtggcttttgaaattgtttttct 35796399  T
Q  310 atttcttttcgttagctttgtaaatgagtcattgt 344  Q
    |||||||||||||||||||||||||||||||||||    
T  35796400 atttcttttcgttagctttgtaaatgagtcattgt 35796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 581 - 856
Target Start/End: Original strand, 35796483 - 35796753
Alignment:
Q  581 aatacataaaagaaaaaagaagcaaaagacacacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgg 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35796483 aatacataaaagaaaaaagaagcaaaagacacacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgg 35796582  T
Q  681 gtgctttcttgctgttgacttttttatttaattgtaatgttaaat-gtagcagtgcacacgttttttgttttctttaatcaaccaaggaaacaaccatca 779  Q
    |||||||||||||||||||||||||||||| || |    |||  | |||  |   ||||||||||||||| ||||||||||||||||||||| ||||||     
T  35796583 gtgctttcttgctgttgacttttttatttacttat----ttatttggtataa--acacacgttttttgttatctttaatcaaccaaggaaactaccatcg 35796676  T
Q  780 caactatatttacataatcaatgcaacaaatgtttatatacaactgcataagcttctggctaatagaacgaactatg 856  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35796677 caactatatttacataatcaatgcaacaaatgtttatatacaactgcataagcttctggctaatataacgaactatg 35796753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 611 - 687
Target Start/End: Complemental strand, 36071637 - 36071561
Alignment:
Q  611 acacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgcttt 687  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  36071637 acacgcccagtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 36071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 620 - 677
Target Start/End: Complemental strand, 43559271 - 43559214
Alignment:
Q  620 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggcca 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43559271 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggcca 43559214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 20203795 - 20203731
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcg 258  Q
    |||||||||||| ||||| |||||||||||||| ||||||| | |||| || |||||||| ||||    
T  20203795 ttcatgaaccaagttcaacgaatcaattgttgaatcgaattacgaactttaatcgagttggttcg 20203731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 27464672 - 27464579
Alignment:
Q  175 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||| || |||| | ||||||||||||||||||  |||||||| | || || | | || |||||| ||||||||| |||| |||||||||    
T  27464672 tcaagttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggttcattgtc 27464579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 31995139 - 31995212
Alignment:
Q  180 ttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 253  Q
    |||||| |||| |||| |||||||||| ||||  ||| |||  | |||| ||||||||||||||||||||||||    
T  31995139 ttcaactcatttgatttatgaaccaaactcaacaaattaatcatcgagttgaatttcaaactatattcgagttg 31995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 612 - 686
Target Start/End: Original strand, 41826237 - 41826311
Alignment:
Q  612 cacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgctt 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41826237 cacacccggtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccattaggccacgggtgctt 41826311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 7447914 - 7448014
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||||||| ||||||| ||||||||||   |||||||||||||||| |||| ||||||||    
T  7447914 tttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggttcattgt 7448013  T
Q  268 c 268  Q
    |    
T  7448014 c 7448014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 20401039 - 20401134
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||   || ||| |||||||||||||||||||| |  ||||   |||||||||||| |||||||||||||||| |||| |||||||||    
T  20401039 gctcaagttcagttcagtaggttcatgaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttcattgtc 20401134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 3942240 - 3942314
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||| ||||||||||||| ||| || ||||||| | |||| || |||||||| |||| |||||||||    
T  3942240 ttcatgaaccaagttcaatgaatcaactgtcgaatcgaattacgaactttaatcgagttggttcggttcattgtc 3942314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 26719859 - 26719953
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || |||| | |||||||||||| | ||||||| ||||| | || |||| | || |||||| ||||||||| ||||||||||||||    
T  26719859 ctcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcgattcattgtc 26719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 35543637 - 35543563
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||| ||||| ||||||||| | || | || | ||||||||| ||||||||| ||||||||||||||    
T  35543637 ttcatgaaccaagttcaacgaatcaattatcgaatggagtctcaaactattttcgagttggttcgattcattgtc 35543563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 10096516 - 10096590
Alignment:
Q  175 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcga 249  Q
    ||||||||||| |||| | |||||||||||| ||| |||||  |||||| ||||||| |||| |||||| |||||    
T  10096516 tcaagttcaactcatttggttcatgaaccaagttcgatgaacaaattgtcgagtcgagtttcgaactatgttcga 10096590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 33124733 - 33124831
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| ||||||||||||  |||| | ||||| |||||| ||||| || | |||||| || |||| |||||||||||  |||||||| |||| |||||||    
T  33124733 tttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaactattgtcgagttggttcggttcattg 33124831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 33899045 - 33898951
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || |||| | |||||||||||| | |||||||  |||| | || |||||| || |||||| ||||||||| |||| |||||||||    
T  33899045 ctcaagttcgactcatttggttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttcattgtc 33898951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 43052910 - 43053008
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| |||||||| || | |||||| |||||||||||| ||||| | || || | | ||||||||| || ||||||| |||||||| |||| |||||||    
T  43052910 tttcggctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattg 43053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 388989 - 389082
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||||| | | |||| |||||||||||| ||||| | || || | | |||| |||| || ||||||| ||||||||||||| |||||||    
T  388989 gctcaagttcagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttgattcggttcattg 389082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 45176309 - 45176382
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||||||||||| ||||| | || |||| | ||||||||| |||||||||| |||||||  |||| ||||||||    
T  45176309 ttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttcattgt 45176382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 611 - 685
Target Start/End: Original strand, 33589090 - 33589164
Alignment:
Q  611 acacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgct 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33589090 acacacccggtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccattaggccacgggtgct 33589164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 609 - 681
Target Start/End: Original strand, 33583342 - 33583414
Alignment:
Q  609 acacacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacggg 681  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33583342 acacacgcccggtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccattaggccacggg 33583414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 48731254 - 48731182
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||| |||| |||||||    
T  48731254 ttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttcattg 48731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 9469836 - 9469910
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||| ||||||  | ||||||| |||||||||| | |||||||||||||||| |||| |||||||||    
T  9469836 ttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattgtc 9469910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 36543840 - 36543914
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||| ||||||| | ||||||| |||||||||| | |||||||||||||||| |||  |||||||||    
T  36543840 ttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggttcagttcattgtc 36543914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 48339206 - 48339106
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| |||||||||| || |||| |||||||||||||| |||||  ||||| |||| || ||||||| | |||| || | |||||| |||||||||||||    
T  48339206 tttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactctaattgagttggttcgattcattgt 48339107  T
Q  268 c 268  Q
    |    
T  48339106 c 48339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 19853011 - 19853109
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| |||||||| || | | |||| |||||||||||| ||||| | || || | | ||||||||| |||||||||| |||||||| ||||||||||||    
T  19853011 tttcagctcaagtccatctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcaaactataatcgagttggttcgattcattg 19853109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 12673129 - 12673037
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| || |||| | |||||||||||| ||||| || |||||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  12673129 ctcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 12673037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 27891420 - 27891519
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| ||||||||||| | |||| | |||||||||||| ||||| || | |||||| || |||| || | ||||||  ||||||||||||||||||||||    
T  27891420 tttcagctcaagttcagctcatttg-ttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttgattcgattcattgt 27891518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 36156401 - 36156301
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| ||||||||||  | |||| | |||| ||||||| ||||| ||||||||||| || ||||||| | |||| || |||||||| |||| ||||||||    
T  36156401 tttcagctcaagttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgt 36156302  T
Q  268 c 268  Q
    |    
T  36156301 c 36156301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 15697185 - 15697090
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||||| |  ||| | |||||||| ||| ||||| ||||||||||| ||||||| | || |||| |||||||||||  ||| |||||||||    
T  15697185 gctcaagttcagcttatttggttcatgaatcaagttcaacgaatcaattgtcgagtcgagtctcgaactttattcgagttgtctcggttcattgtc 15697090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 34980605 - 34980526
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 253  Q
    ||||||||| |  |||| |||||||||| ||| ||||||||||||||| | || |||| | ||||||||| |||||||||    
T  34980605 ctcaagttcgattcatttgattcatgaatcaagttcaatgaatcaattatcgaatcgagtctcaaactattttcgagttg 34980526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 39736746 - 39736805
Alignment:
Q  198 tgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattc 257  Q
    |||||||||||||| ||||||||| | || |||| | ||||||||| |||||||||||||    
T  39736746 tgaaccaaattcaacgaatcaattatcgaatcgagtctcaaactattttcgagttgattc 39736805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 24008004 - 24007910
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||| ||| | |||| |||||||||||| ||||| ||||||||  |  | |||||| || |||||| ||||||||| ||| ||||||||||    
T  24008004 ctcaagtttaactcgttaggttcatgaaccaagttcaacgaatcaatcatcaaatcgaatctcgaactattttcgagttggttcaattcattgtc 24007910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 49083334 - 49083241
Alignment:
Q  175 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||||| |||||| || ||||||||| |||||   |  |||| | ||||| |||||||||||||  || ||||| ||||||||||||||    
T  49083334 tcaagttcaactcattaggtttatgaaccaagttcaacagactaattatcgagtccaatttcaaactattctcaagttggttcgattcattgtc 49083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 612 - 686
Target Start/End: Complemental strand, 26918836 - 26918762
Alignment:
Q  612 cacacccggtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgctt 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  26918836 cacacccggtgggactcgaacccacaatcgcttgattagaagtcaaacgccttatccgttaggccacgggtgctt 26918762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 620 - 687
Target Start/End: Complemental strand, 36003086 - 36003019
Alignment:
Q  620 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgcttt 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  36003086 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 36003019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 620 - 677
Target Start/End: Original strand, 33351060 - 33351117
Alignment:
Q  620 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggcca 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33351060 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggcca 33351117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 20347727 - 20347797
Alignment:
Q  196 catgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  20347727 catgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttcattg 20347797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 40159731 - 40159639
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| || |||| |||||||||||||| | ||||||| ||||| | || |||||| ||||||||| ||||||||| |||| |||||||    
T  40159731 ctcaagttcgactcatttgattcatgaaccaagtccaatgaaccaattatcgaatcgaatatcaaactattttcgagttggttcggttcattg 40159639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 5204570 - 5204479
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcatt 265  Q
    ||||||||| || |||| | |||| ||||||| ||||| || |||||| | || |||||| ||||||||| ||||||||| |||||||||||    
T  5204570 ctcaagttcgactcatttggttcacgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggttcgattcatt 5204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 35810751 - 35810849
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||| ||||||||||| || ||||||| | |||| || |||||||| |||| |||||||    
T  35810751 tttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattg 35810849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 42937112 - 42937205
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||||  | |||| |||||||||||||| ||| | |||||||||||||| ||||||| | |||| || |||||||| |||  |||||||    
T  42937112 gctcaagttcggctcatttgattcatgaaccaagttcgacgaatcaattgttgaatcgaattacgaactctaatcgagttggttcagttcattg 42937205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 28006389 - 28006481
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| || |||| | |||||||||||| ||||| || |||||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  28006389 ctcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 28006481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 11991331 - 11991390
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 253  Q
    ||||||||||| |||||| || | |||||||||||||| || |||||||| |||||||||    
T  11991331 ttcatgaaccatattcaaagagttaattgttgagtcgagttccaaactatgttcgagttg 11991390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 31816610 - 31816701
Alignment:
Q  177 aagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| |||| | |||||||||||| ||||| |||||||||   || | || |||| |||||| ||||||||| |||| |||||||||    
T  31816610 aagttcaactcatttggttcatgaaccaagttcaacgaatcaattaccgaattgagtttcgaactattttcgagttggttcggttcattgtc 31816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 44596557 - 44596648
Alignment:
Q  175 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| | |||| | |||||||||||||||||| || | |||||| || |||| || ||||||||  |||||||| |||| |||||||    
T  44596557 tcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactattgtcgagttggttcggttcattg 44596648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 15257272 - 15257178
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || |||| | |||||||||||| | ||||||| ||||| | || |||| | ||||||||| || |||||| |||| |||||||||    
T  15257272 ctcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcaaactatttttgagttggttcggttcattgtc 15257178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 620 - 687
Target Start/End: Complemental strand, 4271550 - 4271483
Alignment:
Q  620 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgcttt 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4271550 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgcttt 4271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 43384832 - 43384925
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||||||| |||| | |||||||||||| ||||| |||| |||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  43384832 gctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 43384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 39478090 - 39478181
Alignment:
Q  175 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||||| |||| | |||||||||||| | ||||||| ||||| | || |||| | || |||||| ||||||||| |||| |||||||    
T  39478090 tcaagttcaactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttcattg 39478181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 27189189 - 27189092
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcatt 265  Q
    |||| |||||||||| || |||| | |||||||||||| ||| | ||||||||| | || || |||| | |||| || ||||||||||||| ||||||    
T  27189189 tttcagctcaagttcgactcatttggttcatgaaccaagttcgacgaatcaattatcgaatctaattacgaactctaatcgagttgattcggttcatt 27189092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 620 - 686
Target Start/End: Complemental strand, 49918071 - 49918005
Alignment:
Q  620 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgctt 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  49918071 gtgggactcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccatgggcgctt 49918005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 33438838 - 33438738
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| |||||||||| || |||| | |||||||||||| ||||| ||||||||||| || ||||||| |||||| || |||||||| |||| ||||||||    
T  33438838 tttcagctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaactttaatcgagttggttcggttcattgt 33438739  T
Q  268 c 268  Q
    |    
T  33438738 c 33438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 46293320 - 46293220
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| ||||||||||  | |||| | |||||||||||||||||||  | |||||||  ||||||||||  ||||||||||||||||||||| ||||||||    
T  46293320 tttcagctcaagttcggctcatttggttcatgaaccaaattcaattgaccaattgtcaagtcgaattttgaactatattcgagttgattcggttcattgt 46293221  T
Q  268 c 268  Q
    |    
T  46293220 c 46293220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 19560855 - 19560783
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||||||||||| ||||| |||| |||||| |||||||||| | |||||||||||||||| |||| |||||||    
T  19560855 ttcatgaaccaagttcaacgaattaattgtcgagtcgaattccgaactatattcgagttggttcggttcattg 19560783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 30662232 - 30662138
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || |||| |||||||||||||| ||||| || |||||| | || |||||| ||||||||| ||||||||| ||||  ||||||||    
T  30662232 ctcaagttcgactcatttgattcatgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggttcggctcattgtc 30662138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 39135387 - 39135477
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcg 258  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||||||| ||||||| ||||||||||   |||||||||||||||| ||||    
T  39135387 tttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcg 39135477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 25253740 - 25253833
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||||| | |||| | |||||||||||| |||||  | |  ||||| ||||||| || |||||||||||||||||| |||| |||||||    
T  25253740 gctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcattg 25253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 39469638 - 39469553
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 253  Q
    |||| ||||||||||  | |||| |||||||||||||| ||||||| | ||||| | || ||||||| | ||||||||||||||||    
T  39469638 tttcagctcaagttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttg 39469553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 12710741 - 12710833
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| || |||| | |||||||||||| ||||| || |||||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  12710741 ctcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 12710833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 26049641 - 26049549
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| || |||| |||||||||||||| |||||    |||||| | || |||||| ||||||||| ||||||||| |||| |||||||    
T  26049641 ctcaagttcgactcatttgattcatgaaccaagttcaacaggtcaattatcgaatcgaatctcaaactattttcgagttggttcggttcattg 26049549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 52199462 - 52199562
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| ||||||||||| | | || | |||||||||||| ||||| |||| |||||| || |||| |  ||||||||  |||||||| |||||||||||||    
T  52199462 tttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtcccaaactattgtcgagttggttcgattcattgt 52199561  T
Q  268 c 268  Q
    |    
T  52199562 c 52199562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 47782202 - 47782127
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcg 269  Q
    ||||||||||||||||||||  |  ||||| ||||||| ||| ||| |||||| ||||||| ||| ||||||||||    
T  47782202 ttcatgaaccaaattcaatgtgttgattgtcgagtcgagtttaaaaatatatttgagttgactcggttcattgtcg 47782127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 9505228 - 9505130
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| ||||||||||||| |||| | |||||||||||| ||||| || | |||||| || |||| || | ||||||  |||||||| |||| |||||||    
T  9505228 tttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcattg 9505130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 54393550 - 54393452
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| ||||||||||  | |||| | || ||||||||| ||||| ||||||||||| || ||||||| | |||| || |||||||| |||| |||||||    
T  54393550 tttcagctcaagttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattg 54393452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 31620910 - 31621001
Alignment:
Q  177 aagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| |||||| |||||||||||||||||||| |  |||||| |||||||||||| |||||||||| ||||| |||| |||||||||    
T  31620910 aagttcaactcattaggttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttcattgtc 31621001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 3801471 - 3801373
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||| |||| |||||||    
T  3801471 tttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattg 3801373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 15933201 - 15933294
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||| ||||||| |||||| |||||||||||| ||||| |||| || ||| |||||||||||| ||||||| |||||||| |||| |||||||    
T  15933201 gctcatgttcaactcattaggttcatgaaccaagttcaacgaattaactgtcgagtcgaatttcgaactatactcgagttggttcggttcattg 15933294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 34857386 - 34857478
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    ||||||||| || ||||||||||||||| ||| ||||| ||||||||| |||| | |||| ||| ||||| ||||||||| |||| |||||||    
T  34857386 ctcaagttcgactcattagattcatgaatcaagttcaacgaatcaattattgaattgaatctcacactattttcgagttggttcggttcattg 34857478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 27196116 - 27196210
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || |||| | ||||||||||||||| || ||||||||| | || |||| | || |||||| ||||||||| |||| |||||||||    
T  27196116 ctcaagttcgactcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgtc 27196210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 38522942 - 38522870
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||||||||||| ||||||| | ||||| | ||||| |||| | |||||||||||||||| |||| |||||||    
T  38522942 ttcatgaaccaagttcaatggaccaattatcgagtcaaattacgaactatattcgagttggttcggttcattg 38522870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 43386768 - 43386851
Alignment:
Q  187 cattagattcatgaaccaaat--tcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||| |||||||||||| |  |||| | || |||||| || ||||||||||||||||| || |||||||| |||||||||||    
T  43386768 cattaggttcatgaaccaattgttcaacggattaattgtcgaatcgaatttcaaactatactcaagttgatttgattcattgtc 43386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 31021901 - 31021996
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||| |||| | |||| | ||||||||||||| |||| || | |||| | ||||||| || | |||||||||||||||| |||| |||||||||    
T  31021901 gctcaaattcagctcatttggttcatgaaccaaactcaacgagttaattatcgagtcgagttccgaactatattcgagttggttcggttcattgtc 31021996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 27876176 - 27876102
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || ||||||||||||||||||||||| ||  || |||| | ||| ||||| |||| |||||||||    
T  27876176 ttcatgaacgaagttcaatgaatcaattgttgagtcaaacctcgaactttgttcaagttggttcggttcattgtc 27876102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 32945122 - 32945028
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    ||||||||| || |||| | |||||||||||| || || |||||||||   || |||| |||| |||||| ||||||||| |||| |||||||||    
T  32945122 ctcaagttcgactcatttggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttcattgtc 32945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 625 - 686
Target Start/End: Original strand, 6282883 - 6282944
Alignment:
Q  625 actcgaacccacaatcgcttgattagaagtcaagcgccttatccattaggccacgggtgctt 686  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  6282883 actcaaacccacaatcacttgattagaagtcaagcgccttatccattaggccatgggtgctt 6282944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 10961903 - 10961805
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||| |||||| ||| || |||| | |||||||||||| ||||| ||||||||||| || || |||| |||||| || |||||||| |||| |||||||    
T  10961903 tttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaactttaatcgagttggttcggttcattg 10961805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 8596917 - 8596855
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgatt 256  Q
    |||||||| ||||||| | || | |||||| ||||||| |||| |||||||||||||||||||    
T  8596917 ttcatgaatcaaattcgacgagttaattgtcgagtcgagtttcgaactatattcgagttgatt 8596855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 124583 - 124490
Alignment:
Q  173 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||||||||| || |||| | |||||||||||| ||||||| | ||||||| ||||| |||||| |||||||||||||||| |||| |||||||    
T  124583 gctcaagttcgactcatttggttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttcattg 124490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 10050 - 10120
Alignment:
Q  196 catgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 266  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  10050 catgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttcattg 10120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 26728 - 26628
Alignment:
Q  168 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 267  Q
    |||| |||||||||| || |||| |||||||||||||| |||||  ||||| |||| || ||||||| | |||| || | |||||| |||||||||||||    
T  26728 tttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactctaattgagttggttcgattcattgt 26629  T
Q  268 c 268  Q
    |    
T  26628 c 26628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 14465 - 14559
Alignment:
Q  174 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||  |||| | |||||||||||| |||||||||||||||   || |||| |||| |||||| |||| |||| |||| |||||||||    
T  14465 ctcaagttcaaatcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttcattgtc 14559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 21146 - 21220
Alignment:
Q  194 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 268  Q
    |||||||||||| ||||| ||||||||| | || |||| | || |||||| ||||||||| |||| |||||||||    
T  21146 ttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgtc 21220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University